Gm42056 Gene Detail

Summary

• Symbol
  Gm42056
• Name
  predicted gene, 42056

• Feature Type
  lncRNA gene
• IDs
  MGI:5624941
  NCBI Gene: 105246832
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:126687177-126691425 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  276 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624941	lncRNA gene	Chr8:126686527-126692502 (+)
129S1/SvImJ	ENSMUSG00200004847	lncRNA gene	Chr8:120941308-120945717 (+)
A/J	ENSMUSG00195003789	lncRNA gene	Chr8:121216564-121220925 (+)
AKR/J	ENSMUSG00220001764	lncRNA gene	Chr8:121404448-121408809 (+)
BALB/cJ	ENSMUSG00180000935	lncRNA gene	Chr8:121261380-121265741 (+)
C3H/HeJ	ENSMUSG00175005190	lncRNA gene	Chr8:121338104-121342465 (+)
C57BL/6NJ	ENSMUSG00215000730	lncRNA gene	Chr8:120920047-120924456 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036048	lncRNA gene	Chr8:120660756-120665151 (+)
CBA/J	ENSMUSG00210014103	lncRNA gene	Chr8:121251621-121256030 (+)
DBA/2J	ENSMUSG00185039026	lncRNA gene	Chr8:127570619-127575028 (+)
FVB/NJ	ENSMUSG00205041081	lncRNA gene	Chr8:120219256-120223666 (+)
JF1/MsJ	ENSUMUG00000039441	lncRNA gene	Chr8:129761253-129765630 (+)
LP/J	ENSMUSG00230007630	lncRNA gene	Chr8:131123858-131128267 (+)
NOD/ShiLtJ	ENSMUSG00190006847	lncRNA gene	Chr8:121370837-121375245 (+)
NZO/HlLtJ	ENSMUSG00225020223	lncRNA gene	Chr8:134483305-134487714 (+)
PWK/PhJ	ENSLUMG00010040030	lncRNA gene	Chr8:121047514-121051893 (+)
SPRET/EiJ	ENSMSPG00010001814	lncRNA gene	Chr8:123232626-123245393 (+)
WSB/EiJ	ENSIUOG00005003140	lncRNA gene	Chr8:122029239-122033600 (+)

Homology

• Gene Tree
  Gm42056
  

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000120218 (Evidence)
• NCBI Gene
  105246832

Representative Sequences			Length	Strain/Species
genomic	105246832	NCBI Gene Model | MGI Sequence Detail	4249	C57BL/6J
transcript	XR_879364	RefSeq | MGI Sequence Detail	3897	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm42056:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80086	Chr8:126687026-126687053 (+)	-137 bp