Gm42047 Gene Detail

Summary

• Symbol
  Gm42047
• Name
  predicted gene, 42047
• Synonyms
  Gm45836

• Feature Type
  lncRNA gene
• IDs
  MGI:5624932
  NCBI Gene: 105246823
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:122559877-122567924 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  68

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624932	lncRNA gene	Chr8:122559877-122567924 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195016167	lncRNA gene	Chr7:63547572-63554224 (-)
A/J	ENSMUSG00195027774	lncRNA gene	Chr8:117182902-117190832 (+)
A/J	ENSMUSG00195015771	lncRNA gene	Chr10:23924638-23932150 (-)
A/J	ENSMUSG00195051368	lncRNA gene	Chr9:34406027-34413558 (-)
A/J	ENSMUSG00195011207	lncRNA gene	Chr1:81036385-81043905 (-)
A/J	ENSMUSG00195003767	lncRNA gene	Chr4:36618228-36625723 (+)
A/J	ENSMUSG00195003669	lncRNA gene	Chr16:40879707-40887227 (+)
A/J	ENSMUSG00195052486	lncRNA gene	Chr15:80130549-80138069 (+)
A/J	ENSMUSG00195011061	lncRNA gene	Chr5:76672770-76680289 (-)
A/J	ENSMUSG00195002261	lncRNA gene	Chr6:4692420-4699940 (+)
AKR/J	ENSMUSG00220003164	lncRNA gene	Chr4:48091791-48099312 (+)
AKR/J	ENSMUSG00220023146	lncRNA gene	Chr16:41215155-41222675 (+)
AKR/J	ENSMUSG00220011959	lncRNA gene	Chr10:23604988-23612500 (-)
AKR/J	ENSMUSG00220044893	lncRNA gene	Chr8:117374068-117381998 (+)
AKR/J	ENSMUSG00220015080	lncRNA gene	Chr5:76847653-76855172 (-)
AKR/J	ENSMUSG00220021671	lncRNA gene	Chr6:4593370-4600890 (+)
AKR/J	ENSMUSG00220021440	lncRNA gene	Chr7:57092930-57099582 (-)
BALB/cJ	ENSMUSG00180027855	lncRNA gene	Chr8:117228963-117236893 (+)
BALB/cJ	ENSMUSG00180029995	lncRNA gene	Chr16:41086168-41093688 (+)
BALB/cJ	ENSMUSG00180054188	lncRNA gene	Chr15:80007472-80014992 (+)
BALB/cJ	ENSMUSG00180049107	lncRNA gene	Chr9:34534377-34541908 (-)
BALB/cJ	ENSMUSG00180048525	lncRNA gene	Chr4:103275720-103288246 (-)
BALB/cJ	ENSMUSG00180028695	lncRNA gene	Chr4:36198053-36205548 (+)
BALB/cJ	ENSMUSG00180020094	lncRNA gene	Chr10:24053410-24060922 (-)
BALB/cJ	ENSMUSG00180019263	lncRNA gene	Chr1:81308036-81315556 (-)
BALB/cJ	ENSMUSG00180005201	lncRNA gene	Chr7:60257309-60263961 (-)
BALB/cJ	ENSMUSG00180001696	lncRNA gene	Chr6:4816544-4824064 (+)
C3H/HeJ	ENSMUSG00175032968	lncRNA gene	Chr8:117285855-117293785 (+)
C3H/HeJ	ENSMUSG00175023129	lncRNA gene	Chr7:61049371-61056023 (-)
C3H/HeJ	ENSMUSG00175007813	lncRNA gene	Chr6:4645304-4652824 (+)
C3H/HeJ	ENSMUSG00175027057	lncRNA gene	Chr16:41362067-41369587 (+)
C3H/HeJ	ENSMUSG00175053567	lncRNA gene	Chr15:80318397-80325917 (+)
C3H/HeJ	ENSMUSG00175001701	lncRNA gene	Chr1:81468145-81475665 (-)
C3H/HeJ	ENSMUSG00175000520	lncRNA gene	Chr1:2472430-2479950 (-)
C3H/HeJ	ENSMUSG00175044702	lncRNA gene	Chr4:104280067-104292593 (-)
C3H/HeJ	ENSMUSG00175050765	lncRNA gene	Chr9:34535368-34542899 (-)
C3H/HeJ	ENSMUSG00175004329	lncRNA gene	Chr5:78611781-78619300 (-)
C57BL/6NJ	ENSMUSG00215035896	lncRNA gene	Chr8:116865514-116873445 (+)
C57BL/6NJ	ENSMUSG00215038468	lncRNA gene	Chr1:81379294-81386814 (-)
C57BL/6NJ	ENSMUSG00215014686	lncRNA gene	Chr6:4774538-4782058 (+)
C57BL/6NJ	ENSMUSG00215000555	lncRNA gene	Chr5:77365986-77373506 (-)
C57BL/6NJ	ENSMUSG00215031835	lncRNA gene	Chr6:55787385-55794904 (-)
C57BL/6NJ	ENSMUSG00215028730	lncRNA gene	Chr4:47925578-47933099 (+)
C57BL/6NJ	ENSMUSG00215020937	lncRNA gene	Chr2:91677143-91684662 (+)
C57BL/6NJ	ENSMUSG00215053669	lncRNA gene	Chr15:80096410-80103930 (+)
C57BL/6NJ	ENSMUSG00215016141	lncRNA gene	Chr10:23594761-23602273 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210050234	lncRNA gene	Chr15:80093401-80100921 (+)
CBA/J	ENSMUSG00210002215	lncRNA gene	Chr1:2396333-2403853 (-)
CBA/J	ENSMUSG00210012603	lncRNA gene	Chr1:81212231-81219751 (-)
CBA/J	ENSMUSG00210017040	lncRNA gene	Chr16:41384806-41392326 (+)
CBA/J	ENSMUSG00210048458	lncRNA gene	Chr9:34523650-34531179 (-)
CBA/J	ENSMUSG00210038363	lncRNA gene	Chr8:117218068-117225999 (+)
CBA/J	ENSMUSG00210053536	lncRNA gene	Chr4:103913074-103925600 (-)
CBA/J	ENSMUSG00210024532	lncRNA gene	Chr7:60909420-60916073 (-)
CBA/J	ENSMUSG00210000813	lncRNA gene	Chr5:77410621-77418140 (-)
CBA/J	ENSMUSG00210019748	lncRNA gene	Chr4:47817116-47824637 (+)
DBA/2J	ENSMUSG00185036793	lncRNA gene	Chr8:123322962-123330893 (+)
DBA/2J	ENSMUSG00185026342	lncRNA gene	Chr6:4781045-4788565 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225014066	lncRNA gene	Chr6:59299487-59307006 (-)
NZO/HlLtJ	ENSMUSG00225003499	lncRNA gene	Chr4:56338303-56345824 (+)
NZO/HlLtJ	ENSMUSG00225019554	lncRNA gene	Chr6:7612053-7619573 (+)
NZO/HlLtJ	ENSMUSG00225028970	lncRNA gene	Chr16:46945632-46953152 (+)
NZO/HlLtJ	ENSMUSG00225051287	lncRNA gene	Chr15:83777767-83785287 (+)
NZO/HlLtJ	ENSMUSG00225044097	lncRNA gene	Chr8:130323600-130331531 (+)
NZO/HlLtJ	ENSMUSG00225007379	lncRNA gene	Chr4:43597501-43605399 (+)
NZO/HlLtJ	ENSMUSG00225031652	lncRNA gene	Chr10:29915533-29923045 (-)
NZO/HlLtJ	ENSMUSG00225005065	lncRNA gene	Chr1:85446251-85453771 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42047
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73

• Ensembl
  ENSMUSG00000110631 (Evidence)
• NCBI Gene
  105246823

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110631	Ensembl Gene Model | MGI Sequence Detail	8048	C57BL/6J
transcript	ENSMUST00000212899	Ensembl | MGI Sequence Detail	4988	Not Applicable

Other
Accession IDs

MGI:5804951

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;