Gm42031 Gene Detail

Summary

• Symbol
  Gm42031
• Name
  predicted gene, 42031

• Feature Type
  lncRNA gene
• IDs
  MGI:5624916
  NCBI Gene: 105246807
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:85852552-85858443 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624916	lncRNA gene	Chr8:85852501-85858918 (-)
129S1/SvImJ	ENSMUSG00200026181	lncRNA gene	Chr8:80216049-80216096 (-)
A/J	ENSMUSG00195018758	lncRNA gene	Chr8:80576033-80576083 (-)
AKR/J	ENSMUSG00220023884	lncRNA gene	Chr8:80615682-80615729 (-)
BALB/cJ	ENSMUSG00180026830	lncRNA gene	Chr8:80414786-80414833 (-)
C3H/HeJ	ENSMUSG00175026750	lncRNA gene	Chr8:80511696-80511746 (-)
C57BL/6NJ	ENSMUSG00215026298	lncRNA gene	Chr8:80149214-80155631 (-)
C57BL/6NJ	ENSMUSG00215030980	lncRNA gene	Chr5:19932175-19939003 (+)
C57BL/6NJ	ENSMUSG00215051208	lncRNA gene	Chr14:43090758-43098568 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038547	lncRNA gene	Chr8:80024405-80024453 (-)
CBA/J	ENSMUSG00210036909	lncRNA gene	Chr8:80498827-80498877 (-)
DBA/2J	ENSMUSG00185040387	lncRNA gene	Chr8:86607416-86607466 (-)
FVB/NJ	ENSMUSG00205039898	lncRNA gene	Chr8:79554684-79554734 (-)
JF1/MsJ	ENSUMUG00000042202	lncRNA gene	Chr17:14225623-14234413 (+)
JF1/MsJ	ENSUMUG00000014652	lncRNA gene	Chr15:19817418-19826131 (-)
JF1/MsJ	ENSUMUG00000019555	lncRNA gene	Chr15:68860756-68869469 (+)
JF1/MsJ	ENSUMUG00000005356	lncRNA gene	Chr2:19851567-19860290 (-)
JF1/MsJ	ENSUMUG00000041416	lncRNA gene	Chr19:58356236-58364945 (-)
JF1/MsJ	ENSUMUG00000042097	lncRNA gene	Chr17:9430714-9435537 (-)
JF1/MsJ	ENSUMUG00000039768	lncRNA gene	Chr10:36749481-36756317 (+)
JF1/MsJ	ENSUMUG00000016414	lncRNA gene	Chr8:67550011-67556625 (+)
JF1/MsJ	ENSUMUG00000038905	lncRNA gene	Chr8:88924479-88930896 (-)
JF1/MsJ	ENSUMUG00000046740	lncRNA gene	Chr9:40883616-40892329 (-)
JF1/MsJ	ENSUMUG00000043689	lncRNA gene	Chr9:62701431-62710149 (+)
LP/J	ENSMUSG00230030582	lncRNA gene	Chr8:90213027-90213074 (-)
NOD/ShiLtJ	ENSMUSG00190016253	lncRNA gene	Chr8:80575131-80575181 (-)
NZO/HlLtJ	ENSMUSG00225040523	lncRNA gene	Chr8:93609768-93616185 (-)
PWK/PhJ	ENSLUMG00010030254	lncRNA gene	Chr8:80247479-80253395 (-)
SPRET/EiJ	ENSMSPG00010031836	lncRNA gene	Chr8:82171340-82171387 (-)
WSB/EiJ	ENSIUOG00005019455	lncRNA gene	Chr8:81310791-81310838 (-)

Homology

• Gene Tree
  Gm42031
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42031
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000110386 (Evidence)
• NCBI Gene
  105246807

Representative Sequences			Length	Strain/Species
genomic	105246807	NCBI Gene Model | MGI Sequence Detail	5892	C57BL/6J
transcript	NR_168954	RefSeq | MGI Sequence Detail	1359	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;