Gm41979 Gene Detail

Summary

• Symbol
  Gm41979
• Name
  predicted gene, 41979

• Feature Type
  lncRNA gene
• IDs
  MGI:5624864
  NCBI Gene: 105246737
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:154916484-154923613 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  304 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624864	lncRNA gene	Chr1:154900020-154930612 (-)
129S1/SvImJ	ENSMUSG00200002982	lncRNA gene	Chr1:152360089-152373421 (-)
A/J	ENSMUSG00195014953	lncRNA gene	Chr1:151748046-151761375 (-)
AKR/J	ENSMUSG00220006509	lncRNA gene	Chr1:151547304-151560632 (-)
BALB/cJ	ENSMUSG00180034564	lncRNA gene	Chr1:151967389-151980720 (-)
C3H/HeJ	ENSMUSG00175002950	lncRNA gene	Chr1:152006522-152019859 (-)
C57BL/6NJ	ENSMUSG00215003939	lncRNA gene	Chr1:151903044-151916370 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006183	lncRNA gene	Chr1:150537287-150557814 (-)
CBA/J	ENSMUSG00210034347	lncRNA gene	Chr1:151909986-151923309 (-)
DBA/2J	ENSMUSG00185047630	lncRNA gene	Chr1:156180371-156193822 (-)
FVB/NJ	ENSMUSG00205033533	lncRNA gene	Chr1:151042328-151055657 (-)
JF1/MsJ	ENSUMUG00000036186	lncRNA gene	Chr1:155343035-155356374 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013416	lncRNA gene	Chr1:151758137-151771460 (-)
NZO/HlLtJ	ENSMUSG00225006477	lncRNA gene	Chr1:159423202-159436541 (-)
PWK/PhJ	ENSLUMG00010031119	lncRNA gene	Chr1:150693271-150706640 (-)
SPRET/EiJ	ENSMSPG00010044271	lncRNA gene	Chr1:154033044-154046399 (-)
WSB/EiJ	ENSIUOG00005025556	lncRNA gene	Chr1:151319066-151332519 (-)

Homology

• Gene Tree
  Gm41979
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm41979
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120457 (Evidence)
• NCBI Gene
  105246737

Representative Sequences			Length	Strain/Species
genomic	105246737	NCBI Gene Model | MGI Sequence Detail	7130	C57BL/6J
transcript	XR_878637	RefSeq | MGI Sequence Detail	1539	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;