Gm41846 Gene Detail

Summary

• Symbol
  Gm41846
• Name
  predicted gene, 41846

• Feature Type
  lncRNA gene
• IDs
  MGI:5624731
  NCBI Gene: 105246574
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:40717881-40720997 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  236 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624731	lncRNA gene	Chr19:40717876-40725699 (-)
129S1/SvImJ	ENSMUSG00200032423	lncRNA gene	Chr19:37459356-37460224 (-)
A/J	ENSMUSG00195012214	lncRNA gene	Chr19:37559291-37560159 (-)
AKR/J	ENSMUSG00220019079	lncRNA gene	Chr19:37376044-37376912 (-)
BALB/cJ	ENSMUSG00180033732	lncRNA gene	Chr19:37811731-37812599 (-)
C3H/HeJ	ENSMUSG00175042490	lncRNA gene	Chr19:37338698-37339566 (-)
C57BL/6NJ	ENSMUSG00215032745	lncRNA gene	Chr19:37407026-37407893 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015909	lncRNA gene	Chr19:37017638-37018506 (-)
CBA/J	ENSMUSG00210036620	lncRNA gene	Chr19:37420881-37421749 (-)
DBA/2J	ENSMUSG00185033719	lncRNA gene	Chr19:37941031-37941899 (-)
FVB/NJ	ENSMUSG00205008473	lncRNA gene	Chr19:36885135-36886003 (-)
JF1/MsJ	ENSUMUG00000046606	lncRNA gene	Chr19:38106159-38107027 (-)
LP/J	ENSMUSG00230036909	lncRNA gene	Chr19:38729554-38730422 (-)
NOD/ShiLtJ	ENSMUSG00190011227	lncRNA gene	Chr19:37290493-37291361 (-)
NZO/HlLtJ	ENSMUSG00225044639	lncRNA gene	Chr19:42280963-42281831 (-)
PWK/PhJ	ENSLUMG00010001260	lncRNA gene	Chr19:37283039-37283907 (-)
SPRET/EiJ	ENSMSPG00010024617	lncRNA gene	Chr19:37010712-37011547 (-)
WSB/EiJ	ENSIUOG00005039166	lncRNA gene	Chr19:36800851-36801719 (-)

Homology

• Gene Tree
  Gm41846
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  17
• Gene trapped
  17
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000120685 (Evidence)
• NCBI Gene
  105246574

Representative Sequences			Length	Strain/Species
genomic	105246574	NCBI Gene Model | MGI Sequence Detail	3117	C57BL/6J
transcript	XR_877854	RefSeq | MGI Sequence Detail	2854	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm41846:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159218	Chr19:40718740-40718749 (-)	2,252 bp