Gm41836 Gene Detail

Summary

• Symbol
  Gm41836
• Name
  predicted gene, 41836

• Feature Type
  lncRNA gene
• IDs
  MGI:5624721
  NCBI Gene: 105246562
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:35683165-35740694 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2074 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624721	lncRNA gene	Chr19:35555196-35743527 (-)
129S1/SvImJ	ENSMUSG00200030921	lncRNA gene	Chr19:32446951-32512735 (-)
A/J	ENSMUSG00195012112	lncRNA gene	Chr19:32567882-32633655 (-)
AKR/J	ENSMUSG00220019330	lncRNA gene	Chr19:32451617-32517395 (-)
BALB/cJ	ENSMUSG00180034605	lncRNA gene	Chr19:32896662-32962439 (-)
C3H/HeJ	ENSMUSG00175043846	lncRNA gene	Chr19:32319840-32385658 (-)
C57BL/6NJ	ENSMUSG00215028287	lncRNA gene	Chr19:32341798-32407578 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016024	lncRNA gene	Chr19:31979626-32044078 (-)
CBA/J	ENSMUSG00210036816	lncRNA gene	Chr19:32392369-32458164 (-)
DBA/2J	ENSMUSG00185034996	lncRNA gene	Chr19:32923365-32989149 (-)
FVB/NJ	ENSMUSG00205008618	lncRNA gene	Chr19:32161555-32227577 (-)
JF1/MsJ	ENSUMUG00000047530	lncRNA gene	Chr19:33050344-33115163 (-)
LP/J	ENSMUSG00230036379	lncRNA gene	Chr19:33734395-33800167 (-)
NOD/ShiLtJ	ENSMUSG00190011356	lncRNA gene	Chr19:32294996-32360778 (-)
NZO/HlLtJ	ENSMUSG00225029717	lncRNA gene	Chr19:37289205-37353505 (-)
PWK/PhJ	ENSLUMG00010001300	lncRNA gene	Chr19:32427598-32492434 (-)
SPRET/EiJ	ENSMSPG00010023518	lncRNA gene	Chr19:32143591-32207505 (-)
WSB/EiJ	ENSIUOG00005039415	lncRNA gene	Chr19:31808804-31872870 (-)

Homology

• Gene Tree
  Gm41836
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000118212 (Evidence)
• NCBI Gene
  105246562

Representative Sequences			Length	Strain/Species
genomic	105246562	NCBI Gene Model | MGI Sequence Detail	57530	C57BL/6J
transcript	XR_877825	RefSeq | MGI Sequence Detail	4911	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm41836:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159027	Chr19:35726203-35726208 (-)	14,488 bp