Gm41821 Gene Detail

Summary

• Symbol
  Gm41821
• Name
  predicted gene, 41821

• Feature Type
  lncRNA gene
• IDs
  MGI:5624706
  NCBI Gene: 105246547
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:23277294-23287018 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  393 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624706	lncRNA gene	Chr19:23259460-23287018 (+)
129S1/SvImJ	ENSMUSG00200020720	lncRNA gene	Chr19:19989167-20007436 (+)
A/J	ENSMUSG00195036561	lncRNA gene	Chr19:20123385-20141653 (+)
AKR/J	ENSMUSG00220019603	lncRNA gene	Chr19:20140898-20159166 (+)
BALB/cJ	ENSMUSG00180013837	lncRNA gene	Chr19:20469962-20488212 (+)
C3H/HeJ	ENSMUSG00175003967	lncRNA gene	Chr19:19836462-19854671 (+)
C57BL/6NJ	ENSMUSG00215025247	lncRNA gene	Chr19:19869354-19887625 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008989	lncRNA gene	Chr19:19729474-19747702 (+)
CBA/J	ENSMUSG00210014989	lncRNA gene	Chr19:20067816-20086023 (+)
DBA/2J	ENSMUSG00185026653	lncRNA gene	Chr19:20454110-20472317 (+)
FVB/NJ	ENSMUSG00205004357	lncRNA gene	Chr19:19898003-19916258 (+)
JF1/MsJ	ENSUMUG00000037162	lncRNA gene	Chr19:20680671-20698887 (+)
LP/J	ENSMUSG00230029145	lncRNA gene	Chr19:21299076-21317344 (+)
NOD/ShiLtJ	ENSMUSG00190021572	lncRNA gene	Chr19:19825715-19849298 (+)
NZO/HlLtJ	ENSMUSG00225034583	lncRNA gene	Chr19:25046558-25064765 (+)
PWK/PhJ	ENSLUMG00010008855	lncRNA gene	Chr19:20009915-20028154 (+)
SPRET/EiJ	ENSMSPG00010018639	lncRNA gene	Chr19:19993027-20019240 (+)
WSB/EiJ	ENSIUOG00005007307	lncRNA gene	Chr19:19543952-19562291 (+)

Homology

• Gene Tree
  Gm41821
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000117837 (Evidence)
• NCBI Gene
  105246547

Representative Sequences			Length	Strain/Species
genomic	105246547	NCBI Gene Model | MGI Sequence Detail	9725	C57BL/6J
transcript	XR_877770	RefSeq | MGI Sequence Detail	869	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;