Gm41793 Gene Detail

Summary

• Symbol
  Gm41793
• Name
  predicted gene, 41793

• Feature Type
  lncRNA gene
• IDs
  MGI:5624678
  NCBI Gene: 105246512
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:82722573-82744304 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  778 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624678	lncRNA gene	Chr18:82722573-82744304 (-)
129S1/SvImJ	ENSMUSG00200029818	lncRNA gene	Chr18:79941783-79955222 (-)
A/J	ENSMUSG00195005016	lncRNA gene	Chr18:80039711-80053097 (-)
AKR/J	ENSMUSG00220017368	lncRNA gene	Chr18:79959241-79972639 (-)
BALB/cJ	ENSMUSG00180013710	lncRNA gene	Chr18:80606420-80619810 (-)
C3H/HeJ	ENSMUSG00175012913	lncRNA gene	Chr18:80146603-80159996 (-)
C57BL/6NJ	ENSMUSG00215027594	lncRNA gene	Chr18:79525575-79538961 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030103	lncRNA gene	Chr18:79056304-79069791 (-)
CBA/J	ENSMUSG00210035455	lncRNA gene	Chr18:80097081-80110481 (-)
DBA/2J	ENSMUSG00185011991	lncRNA gene	Chr18:80002397-80015790 (-)
FVB/NJ	ENSMUSG00205018173	lncRNA gene	Chr18:79410457-79423849 (-)
JF1/MsJ	ENSUMUG00000034328	lncRNA gene	Chr18:79890850-79904564 (-)
LP/J	ENSMUSG00230018605	lncRNA gene	Chr18:82043978-82057414 (-)
NOD/ShiLtJ	ENSMUSG00190025201	lncRNA gene	Chr18:79827508-79840896 (-)
NZO/HlLtJ	ENSMUSG00225023570	lncRNA gene	Chr18:81927482-81940873 (-)
PWK/PhJ	ENSLUMG00010007075	lncRNA gene	Chr18:80286128-80299935 (-)
SPRET/EiJ	ENSMSPG00010009265	lncRNA gene	Chr18:80649593-80663358 (-)
WSB/EiJ	ENSIUOG00005008451	lncRNA gene	Chr18:79459888-79473353 (-)

Homology

• Gene Tree
  Gm41793
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm41793
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000117842 (Evidence)
• NCBI Gene
  105246512

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117842	Ensembl Gene Model | MGI Sequence Detail	21732	C57BL/6J
transcript	ENSMUST00000236295	Ensembl | MGI Sequence Detail	853	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;