Gm41780 Pseudogene Detail

Summary

• Symbol
  Gm41780
• Name
  predicted gene, 41780

• Feature Type
  pseudogene
• IDs
  MGI:5624665
  NCBI Gene: 105246495
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:30741590-30741943 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624665	pseudogene	Chr18:30741590-30741943 (-)
129S1/SvImJ	ENSMUSG00200016334	pseudogene	Chr18:27755076-27755429 (-)
A/J	ENSMUSG00195002488	pseudogene	Chr18:27919233-27919586 (-)
AKR/J	ENSMUSG00220011713	pseudogene	Chr18:27856864-27857217 (-)
BALB/cJ	ENSMUSG00180003635	pseudogene	Chr18:28325087-28325440 (-)
C3H/HeJ	ENSMUSG00175024732	pseudogene	Chr18:27855406-27855759 (-)
C57BL/6NJ	ENSMUSG00215024861	pseudogene	Chr18:27611287-27611640 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016287	pseudogene	Chr18:27523713-27524066 (-)
CBA/J	ENSMUSG00210016159	pseudogene	Chr18:27904221-27904574 (-)
DBA/2J	ENSMUSG00185023455	pseudogene	Chr18:27852550-27852903 (-)
FVB/NJ	ENSMUSG00205023073	pseudogene	Chr18:27579777-27580130 (-)
JF1/MsJ	ENSUMUG00000029383	pseudogene	Chr18:27945258-27945611 (-)
LP/J	ENSMUSG00230006198	pseudogene	Chr18:29942568-29942921 (-)
NOD/ShiLtJ	ENSMUSG00190007078	pseudogene	Chr18:27646862-27647215 (-)
NZO/HlLtJ	ENSMUSG00225025644	pseudogene	Chr18:29876594-29876947 (-)
PWK/PhJ	ENSLUMG00010003760	pseudogene	Chr18:28136712-28137065 (-)
SPRET/EiJ	ENSMSPG00010023176	pseudogene	Chr18:28109990-28110342 (-)
SPRET/EiJ	ENSMSPG00010033193	pseudogene	Chr5:17291830-17292176 (+)
WSB/EiJ	ENSIUOG00005002805	pseudogene	Chr18:27630276-27630629 (-)

Homology

• Gene Tree
  Gm41780
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117526 (Evidence)
• NCBI Gene
  105246495

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117526	Ensembl Gene Model | MGI Sequence Detail	354	C57BL/6J
transcript	ENSMUST00000235078	Ensembl | MGI Sequence Detail	354	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41780:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152694	Chr18:30742108-30742109 (-)	-166 bp