Gm41715 Gene Detail

Summary

• Symbol
  Gm41715
• Name
  predicted gene, 41715

• Feature Type
  lncRNA gene
• IDs
  MGI:5624600
  NCBI Gene: 105246425
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:43977709-44003481 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  897 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624600	lncRNA gene	Chr18:43913319-44003723 (+)
129S1/SvImJ	ENSMUSG00200031468	lncRNA gene	Chr18:41016598-41047145 (+)
A/J	ENSMUSG00195025725	lncRNA gene	Chr18:41175144-41205725 (+)
AKR/J	ENSMUSG00220021378	lncRNA gene	Chr18:41136778-41167355 (+)
BALB/cJ	ENSMUSG00180008107	lncRNA gene	Chr18:41624802-41655360 (+)
C3H/HeJ	ENSMUSG00175011053	lncRNA gene	Chr18:41125804-41156361 (+)
C57BL/6NJ	ENSMUSG00215009800	lncRNA gene	Chr18:40852090-40882650 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014016	lncRNA gene	Chr18:40712966-40743019 (+)
CBA/J	ENSMUSG00210022592	lncRNA gene	Chr18:41190547-41221100 (+)
DBA/2J	ENSMUSG00185028481	lncRNA gene	Chr18:41099275-41129834 (+)
FVB/NJ	ENSMUSG00205015859	lncRNA gene	Chr18:40743965-40774509 (+)
JF1/MsJ	ENSUMUG00000028889	lncRNA gene	Chr18:41242661-41273276 (+)
LP/J	ENSMUSG00230028622	lncRNA gene	Chr18:43206238-43236782 (+)
NOD/ShiLtJ	ENSMUSG00190028544	lncRNA gene	Chr18:40864876-40895430 (+)
NZO/HlLtJ	ENSMUSG00225027486	lncRNA gene	Chr18:43073308-43103865 (+)
PWK/PhJ	ENSLUMG00010021938	lncRNA gene	Chr18:41335586-41366160 (+)
SPRET/EiJ	ENSMSPG00010013245	lncRNA gene	Chr18:41467832-41502227 (+)
WSB/EiJ	ENSIUOG00005009640	lncRNA gene	Chr18:40831954-40862495 (+)

Homology

• Gene Tree
  Gm41715
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000117902 (Evidence)
• NCBI Gene
  105246425

Representative Sequences			Length	Strain/Species
genomic	105246425	NCBI Gene Model | MGI Sequence Detail	25773	C57BL/6J
transcript	XR_877370	RefSeq | MGI Sequence Detail	307	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;