Gm41664 Gene Detail

Summary

• Symbol
  Gm41664
• Name
  predicted gene, 41664

• Feature Type
  lncRNA gene
• IDs
  MGI:5624549
  NCBI Gene: 105246365
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:6240679-6308928 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1700 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624549	lncRNA gene	Chr18:6234863-6326693 (+)
129S1/SvImJ	ENSMUSG00200025513	lncRNA gene	Chr18:3161399-3188990 (+)
A/J	ENSMUSG00195008887	lncRNA gene	Chr18:3353126-3380696 (+)
AKR/J	ENSMUSG00220019409	lncRNA gene	Chr18:3353707-3381293 (+)
BALB/cJ	ENSMUSG00180005363	lncRNA gene	Chr18:3824077-3851650 (+)
C3H/HeJ	ENSMUSG00175008110	lncRNA gene	Chr18:3359531-3387103 (+)
C57BL/6NJ	ENSMUSG00215025157	lncRNA gene	Chr18:3073921-3101501 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017182	lncRNA gene	Chr18:3311309-3331750 (+)
CBA/J	ENSMUSG00210021955	lncRNA gene	Chr18:3366352-3393923 (+)
DBA/2J	ENSMUSG00185030479	lncRNA gene	Chr18:3352855-3380431 (+)
FVB/NJ	ENSMUSG00205034695	lncRNA gene	Chr18:3133934-3161513 (+)
JF1/MsJ	ENSUMUG00000040158	lncRNA gene	Chr18:3382626-3402789 (+)
LP/J	ENSMUSG00230029277	lncRNA gene	Chr18:5411309-5438895 (+)
NOD/ShiLtJ	ENSMUSG00190010211	lncRNA gene	Chr18:3125541-3153116 (+)
NZO/HlLtJ	ENSMUSG00225034946	lncRNA gene	Chr18:5335977-5363550 (+)
PWK/PhJ	ENSLUMG00010009692	lncRNA gene	Chr18:3558222-3578630 (+)
SPRET/EiJ	ENSMSPG00010011797	lncRNA gene	Chr18:3091678-3108674 (+)
WSB/EiJ	ENSIUOG00005027834	lncRNA gene	Chr18:3269750-3290184 (+)

Homology

• Gene Tree
  Gm41664
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  3

• Ensembl
  ENSMUSG00000117519 (Evidence)
• NCBI Gene
  105246365

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117519	Ensembl Gene Model | MGI Sequence Detail	68250	C57BL/6J
transcript	ENSMUST00000253539	Ensembl | MGI Sequence Detail	965	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;