Gm41659 Gene Detail

Summary

• Symbol
  Gm41659
• Name
  predicted gene, 41659

• Feature Type
  lncRNA gene
• IDs
  MGI:5624544
  NCBI Gene: 105246360
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr18:4869777-4912271 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624544	lncRNA gene	Chr18:4866549-4912274 (+)
129S1/SvImJ	ENSMUSG00200025369	lncRNA gene	Chr18:1825733-1829094 (+)
A/J	ENSMUSG00195009019	lncRNA gene	Chr18:2020802-2024159 (+)
AKR/J	ENSMUSG00220019583	lncRNA gene	Chr18:2014444-2017809 (+)
BALB/cJ	ENSMUSG00180005410	lncRNA gene	Chr18:2489579-2492932 (+)
C3H/HeJ	ENSMUSG00175007982	lncRNA gene	Chr18:2025129-2028482 (+)
C57BL/6NJ	ENSMUSG00215024204	lncRNA gene	Chr18:1741644-1745001 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017590	lncRNA gene	Chr18:1974484-1978198 (+)
CBA/J	ENSMUSG00210021944	lncRNA gene	Chr18:2031987-2035340 (+)
DBA/2J	ENSMUSG00185031444	lncRNA gene	Chr18:2020630-2023987 (+)
FVB/NJ	ENSMUSG00205037110	lncRNA gene	Chr18:1776123-1779480 (+)
JF1/MsJ	ENSUMUG00000040578	lncRNA gene	Chr18:2033858-2037335 (+)
LP/J	ENSMUSG00230028519	lncRNA gene	Chr18:4075108-4078469 (+)
NOD/ShiLtJ	ENSMUSG00190010420	lncRNA gene	Chr18:1783213-1786570 (+)
NZO/HlLtJ	ENSMUSG00225034662	lncRNA gene	Chr18:4003847-4007204 (+)
PWK/PhJ	ENSLUMG00010009798	lncRNA gene	Chr18:2206431-2209926 (+)
SPRET/EiJ	ENSMSPG00010012210	lncRNA gene	Chr18:1711860-1715263 (+)
WSB/EiJ	ENSIUOG00005027361	lncRNA gene	Chr18:1935898-1939251 (+)

Homology

• Gene Tree
  Gm41659
  

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  3

• Ensembl
  ENSMUSG00000120077 (Evidence)
• NCBI Gene
  105246360

Representative Sequences			Length	Strain/Species
genomic	105246360	NCBI Gene Model | MGI Sequence Detail	42495	C57BL/6J
transcript	XR_877157	RefSeq | MGI Sequence Detail	1184	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41659:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149918	Chr18:4908906-4908940 (+)	39,146 bp
Tssr149919	Chr18:4908944-4908963 (+)	39,177 bp
Tssr149920	Chr18:4908965-4908974 (+)	39,193 bp
Tssr5237	Chr18:4909199-4909207 (+)	39,426 bp