Gm41653 Gene Detail

Summary

• Symbol
  Gm41653
• Name
  predicted gene, 41653

• Feature Type
  lncRNA gene
• IDs
  MGI:5624538
  NCBI Gene: 105246353
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:90266180-90284060 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  692 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624538	lncRNA gene	Chr17:90263016-90284213 (-)
129S1/SvImJ	ENSMUSG00200022992	lncRNA gene	Chr17:85652739-85674220 (-)
A/J	ENSMUSG00195030926	lncRNA gene	Chr17:87053224-87074692 (-)
AKR/J	ENSMUSG00220016651	lncRNA gene	Chr17:86082156-86103626 (-)
BALB/cJ	ENSMUSG00180029164	lncRNA gene	Chr17:86725295-86746757 (-)
C3H/HeJ	ENSMUSG00175007161	lncRNA gene	Chr17:85996409-86017873 (-)
C57BL/6NJ	ENSMUSG00215020351	lncRNA gene	Chr17:85713078-85734285 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011982	lncRNA gene	Chr17:86549400-86570512 (-)
CBA/J	ENSMUSG00210022453	lncRNA gene	Chr17:85849685-85871143 (-)
DBA/2J	ENSMUSG00185021226	lncRNA gene	Chr17:88651535-88672991 (-)
FVB/NJ	ENSMUSG00205006320	lncRNA gene	Chr17:86484635-86505829 (-)
JF1/MsJ	ENSUMUG00000018787	lncRNA gene	Chr17:88433023-88452335 (-)
LP/J	ENSMUSG00230010963	lncRNA gene	Chr17:89693920-89715370 (-)
NOD/ShiLtJ	ENSMUSG00190010038	lncRNA gene	Chr17:85733720-85755209 (-)
NZO/HlLtJ	ENSMUSG00225029518	lncRNA gene	Chr17:91940416-91961874 (-)
PWK/PhJ	ENSLUMG00010033441	lncRNA gene	Chr17:85631275-85653007 (-)
SPRET/EiJ	ENSMSPG00010021936	lncRNA gene	Chr17:86229356-86252979 (-)
WSB/EiJ	ENSIUOG00005023144	lncRNA gene	Chr17:86684280-86705758 (-)

Homology

• Gene Tree
  Gm41653
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117635 (Evidence)
• NCBI Gene
  105246353

Representative Sequences			Length	Strain/Species
genomic	105246353	NCBI Gene Model | MGI Sequence Detail	17881	C57BL/6J
transcript	XR_877115	RefSeq | MGI Sequence Detail	1107	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;