Gm41611 Gene Detail

Summary

• Symbol
  Gm41611
• Name
  predicted gene, 41611

• Feature Type
  lncRNA gene
• IDs
  MGI:5624496
  NCBI Gene: 105246309
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:71274873-71278800 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624496	lncRNA gene	Chr17:71274853-71278800 (+)
129S1/SvImJ	ENSMUSG00200039523	lncRNA gene	Chr17:66610134-66614050 (+)
A/J	ENSMUSG00195018920	lncRNA gene	Chr17:67955440-67959379 (+)
AKR/J	ENSMUSG00220018544	lncRNA gene	Chr17:66990251-66994173 (+)
BALB/cJ	ENSMUSG00180020735	lncRNA gene	Chr17:67691637-67695576 (+)
C3H/HeJ	ENSMUSG00175031656	lncRNA gene	Chr17:67004801-67008740 (+)
C57BL/6NJ	ENSMUSG00215029365	lncRNA gene	Chr17:66690956-66694877 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027224	lncRNA gene	Chr17:67542034-67545951 (+)
CBA/J	ENSMUSG00210030418	lncRNA gene	Chr17:66816837-66820775 (+)
DBA/2J	ENSMUSG00185023316	lncRNA gene	Chr17:69649926-69653864 (+)
FVB/NJ	ENSMUSG00205019450	lncRNA gene	Chr17:67464429-67468350 (+)
JF1/MsJ	ENSUMUG00000038977	lncRNA gene	Chr17:69310363-69314293 (+)
LP/J	ENSMUSG00230017343	lncRNA gene	Chr17:70615502-70619418 (+)
NOD/ShiLtJ	ENSMUSG00190037042	lncRNA gene	Chr17:66753284-66757206 (+)
NZO/HlLtJ	ENSMUSG00225029162	lncRNA gene	Chr17:72888887-72892803 (+)
PWK/PhJ	ENSLUMG00010030868	lncRNA gene	Chr17:66532799-66536728 (+)
SPRET/EiJ	ENSMSPG00010017487	lncRNA gene	Chr17:66900924-66904826 (+)
WSB/EiJ	ENSIUOG00005032615	lncRNA gene	Chr17:67667070-67670973 (+)

Homology

• Gene Tree
  Gm41611
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000117079 (Evidence)
• NCBI Gene
  105246309

Representative Sequences			Length	Strain/Species
genomic	105246309	NCBI Gene Model | MGI Sequence Detail	3928	C57BL/6J
transcript	NR_168105	RefSeq | MGI Sequence Detail	2951	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41611:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145712	Chr17:71274867-71274889 (+)	5 bp