Gm41608 Gene Detail

Summary

• Symbol
  Gm41608
• Name
  predicted gene, 41608

• Feature Type
  lncRNA gene
• IDs
  MGI:5624493
  NCBI Gene: 105246304
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:66825757-66831554 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624493	lncRNA gene	Chr17:66813309-66831554 (+)
129S1/SvImJ	ENSMUSG00200039350	lncRNA gene	Chr17:62166485-62172282 (+)
A/J	ENSMUSG00195019462	lncRNA gene	Chr17:63508794-63514591 (+)
AKR/J	ENSMUSG00220018513	lncRNA gene	Chr17:62589114-62594911 (+)
BALB/cJ	ENSMUSG00180020489	lncRNA gene	Chr17:63246111-63251908 (+)
C3H/HeJ	ENSMUSG00175030548	lncRNA gene	Chr17:62553624-62559421 (+)
C57BL/6NJ	ENSMUSG00215034295	lncRNA gene	Chr17:62213997-62219794 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026857	lncRNA gene	Chr17:63170729-63176523 (+)
CBA/J	ENSMUSG00210030492	lncRNA gene	Chr17:62353543-62359340 (+)
DBA/2J	ENSMUSG00185023022	lncRNA gene	Chr17:65198017-65203814 (+)
FVB/NJ	ENSMUSG00205017785	lncRNA gene	Chr17:62972602-62978399 (+)
JF1/MsJ	ENSUMUG00000039759	lncRNA gene	Chr17:64852347-64858141 (+)
LP/J	ENSMUSG00230017180	lncRNA gene	Chr17:66184724-66190521 (+)
NOD/ShiLtJ	ENSMUSG00190041938	lncRNA gene	Chr17:62332467-62338264 (+)
NZO/HlLtJ	ENSMUSG00225026161	lncRNA gene	Chr17:68461464-68467261 (+)
PWK/PhJ	ENSLUMG00010031199	lncRNA gene	Chr17:62141334-62147130 (+)
SPRET/EiJ	ENSMSPG00010018016	lncRNA gene	Chr17:62497063-62503095 (+)
WSB/EiJ	ENSIUOG00005032065	lncRNA gene	Chr17:63205861-63211658 (+)

Homology

• Gene Tree
  Gm41608
  

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000121111 (Evidence)
• NCBI Gene
  105246304

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121111	Ensembl Gene Model | MGI Sequence Detail	5798	C57BL/6J
transcript	ENSMUST00000247541	Ensembl | MGI Sequence Detail	1429	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41608:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145608	Chr17:66825772-66825790 (+)	24 bp