Gm41584 Gene Detail

Summary

• Symbol
  Gm41584
• Name
  predicted gene, 41584
• Synonyms
  Mi-Lnc77

• Feature Type
  lncRNA gene
• IDs
  MGI:5624469
  NCBI Gene: 105246280
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:46196236-46199549 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  195 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624469	lncRNA gene	Chr17:46166784-46199557 (+)
129S1/SvImJ	ENSMUSG00200028182	lncRNA gene	Chr17:41399177-41402461 (+)
A/J	ENSMUSG00195022825	lncRNA gene	Chr17:42899250-42902534 (+)
AKR/J	ENSMUSG00220036748	lncRNA gene	Chr17:41884875-41888159 (+)
BALB/cJ	ENSMUSG00180024942	lncRNA gene	Chr17:42649637-42652921 (+)
C3H/HeJ	ENSMUSG00175016203	lncRNA gene	Chr17:41963636-41966920 (+)
C57BL/6NJ	ENSMUSG00215034477	lncRNA gene	Chr17:41518727-41522011 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026137	lncRNA gene	Chr17:42695370-42698648 (+)
CBA/J	ENSMUSG00210037594	lncRNA gene	Chr17:41713339-41716623 (+)
DBA/2J	ENSMUSG00185030637	lncRNA gene	Chr17:44618540-44621824 (+)
FVB/NJ	ENSMUSG00205052755	lncRNA gene	Chr17:42192524-42195808 (+)
JF1/MsJ	ENSUMUG00000035790	lncRNA gene	Chr17:44227827-44231112 (+)
LP/J	ENSMUSG00230041558	lncRNA gene	Chr17:45506547-45509831 (+)
NOD/ShiLtJ	ENSMUSG00190019128	lncRNA gene	Chr17:41592372-41595656 (+)
NZO/HlLtJ	ENSMUSG00225043768	lncRNA gene	Chr17:47768690-47771974 (+)
PWK/PhJ	ENSLUMG00010037098	lncRNA gene	Chr17:41466839-41470123 (+)
SPRET/EiJ	ENSMSPG00010038607	lncRNA gene	Chr17:41692756-41696048 (+)
WSB/EiJ	ENSIUOG00005027407	lncRNA gene	Chr17:42565559-42568843 (+)

Homology

• Gene Tree
  Gm41584
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  607
• Tissues
  10
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  4

• Ensembl
  ENSMUSG00000117048 (Evidence)
• NCBI Gene
  105246280

Representative Sequences			Length	Strain/Species
genomic	105246280	NCBI Gene Model | MGI Sequence Detail	3314	C57BL/6J
transcript	AK148531	GenBank | ENA | DDBJ | MGI Sequence Detail	2983	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

References

• Summaries
  All 7

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:356276 Moran I, et al., Human beta cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. Cell Metab. 2012 Oct 3;16(4):435-48