Gm41562 Gene Detail

Summary

• Symbol
  Gm41562
• Name
  predicted gene, 41562

• Feature Type
  lncRNA gene
• IDs
  MGI:5624447
  NCBI Gene: 105246254
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:31164759-31171400 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  414 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624447	lncRNA gene	Chr17:31164754-31171735 (+)
129S1/SvImJ	ENSMUSG00200054123	lncRNA gene	Chr17:26851106-26857970 (+)
A/J	ENSMUSG00195054665	lncRNA gene	Chr17:27782977-27789845 (+)
AKR/J	ENSMUSG00220053973	lncRNA gene	Chr17:26811042-26817908 (+)
BALB/cJ	ENSMUSG00180050182	lncRNA gene	Chr17:27126563-27133427 (+)
C3H/HeJ	ENSMUSG00175053891	lncRNA gene	Chr17:26692277-26699140 (+)
C57BL/6NJ	ENSMUSG00215054664	lncRNA gene	Chr17:26682182-26689052 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050209	lncRNA gene	Chr17:27556439-27563311 (+)
CBA/J	ENSMUSG00210051445	lncRNA gene	Chr17:26519312-26526178 (+)
DBA/2J	ENSMUSG00185054547	lncRNA gene	Chr17:29137108-29143972 (+)
FVB/NJ	ENSMUSG00205053708	lncRNA gene	Chr17:26993078-26999941 (+)
JF1/MsJ	ENSUMUG00000057991	lncRNA gene	Chr17:28313118-28320002 (+)
LP/J	ENSMUSG00230055261	lncRNA gene	Chr17:30249670-30256534 (+)
NOD/ShiLtJ	ENSMUSG00190054338	lncRNA gene	Chr17:26633802-26640644 (+)
NZO/HlLtJ	ENSMUSG00225055099	lncRNA gene	Chr17:32226894-32233775 (+)
PWK/PhJ	ENSLUMG00010053487	lncRNA gene	Chr17:26117980-26124833 (+)
SPRET/EiJ	ENSMSPG00010050782	lncRNA gene	Chr17:27383019-27389728 (+)
WSB/EiJ	ENSIUOG00005052422	lncRNA gene	Chr17:27400358-27407219 (+)

Homology

• Gene Tree
  Gm41562
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000118284 (Evidence)
• NCBI Gene
  105246254

Representative Sequences			Length	Strain/Species
genomic	105246254	NCBI Gene Model | MGI Sequence Detail	6642	C57BL/6J
transcript	XR_876734	RefSeq | MGI Sequence Detail	1188	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;