Gm41480 Gene Detail

Summary

• Symbol
  Gm41480
• Name
  predicted gene, 41480

• Feature Type
  lncRNA gene
• IDs
  MGI:5624365
  NCBI Gene: 105246144
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:81969179-81991631 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  898 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624365	lncRNA gene	Chr16:81969160-81991637 (+)
129S1/SvImJ	ENSMUSG00200016284	lncRNA gene	Chr16:78857790-78880244 (+)
A/J	ENSMUSG00195023761	lncRNA gene	Chr16:78626033-78648495 (+)
AKR/J	ENSMUSG00220018034	lncRNA gene	Chr16:78814908-78837361 (+)
BALB/cJ	ENSMUSG00180002250	lncRNA gene	Chr16:78704252-78726704 (+)
C3H/HeJ	ENSMUSG00175009215	lncRNA gene	Chr16:79002472-79024927 (+)
C57BL/6NJ	ENSMUSG00215001726	lncRNA gene	Chr16:78829882-78852334 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007363	lncRNA gene	Chr16:78552602-78571665 (+)
CBA/J	ENSMUSG00210019699	lncRNA gene	Chr16:78930071-78952519 (+)
DBA/2J	ENSMUSG00185005447	lncRNA gene	Chr16:78864416-78886868 (+)
FVB/NJ	ENSMUSG00205014785	lncRNA gene	Chr16:78700615-78723069 (+)
JF1/MsJ	ENSUMUG00000012019	lncRNA gene	Chr16:78999187-79021511 (+)
LP/J	ENSMUSG00230019931	lncRNA gene	Chr16:81418664-81441116 (+)
NOD/ShiLtJ	ENSMUSG00190011105	lncRNA gene	Chr16:78861670-78884120 (+)
NZO/HlLtJ	ENSMUSG00225030935	lncRNA gene	Chr16:84573597-84596061 (+)
PWK/PhJ	ENSLUMG00010005341	lncRNA gene	Chr16:78647140-78666119 (+)
SPRET/EiJ	ENSMSPG00010015265	lncRNA gene	Chr16:79658656-79680926 (+)
WSB/EiJ	ENSIUOG00005017913	lncRNA gene	Chr16:78812450-78834914 (+)

Homology

• Gene Tree
  Gm41480
  

Human Diseases

• References
  6 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  376 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  3 involving Gm41480
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000116937 (Evidence)
• NCBI Gene
  105246144

Representative Sequences			Length	Strain/Species
genomic	105246144	NCBI Gene Model | MGI Sequence Detail	22453	C57BL/6J
transcript	XR_876186	RefSeq | MGI Sequence Detail	842	C57BL/6J

References

• Summaries
  All 379

  Diseases 6

  Phenotypes 376
• Earliest
  J:30229 Davisson MT, et al., Segmental trisomy as a mouse model for Down syndrome. Prog Clin Biol Res. 1993;384:117-33
• Latest
  J:391449 Thibodeau J, et al., Loss of cystathionine-beta-synthase contributes to elevated OXPHOS, a vulnerability in Ara-C-resistant Myeloid Leukemia in Down syndrome. Biochem Pharmacol. 2026 Feb 13;247:117815