Gm41452 Gene Detail

Summary

• Symbol
  Gm41452
• Name
  predicted gene, 41452

• Feature Type
  lncRNA gene
• IDs
  MGI:5624337
  NCBI Gene: 105246110
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:37662649-37669957 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  328 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624337	lncRNA gene	Chr16:37644628-37669963 (-)
129S1/SvImJ	ENSMUSG00200029468	lncRNA gene	Chr16:34599184-34600060 (-)
A/J	ENSMUSG00195011240	lncRNA gene	Chr16:34144434-34145310 (-)
AKR/J	ENSMUSG00220029404	lncRNA gene	Chr16:34523385-34524261 (-)
BALB/cJ	ENSMUSG00180013333	lncRNA gene	Chr16:34360064-34360940 (-)
C3H/HeJ	ENSMUSG00175032721	lncRNA gene	Chr16:34586125-34587001 (-)
C57BL/6NJ	ENSMUSG00215022978	lncRNA gene	Chr16:34434815-34435691 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032658	lncRNA gene	Chr16:34883701-34884577 (-)
CBA/J	ENSMUSG00210028739	lncRNA gene	Chr16:34643201-34644077 (-)
DBA/2J	ENSMUSG00185025033	lncRNA gene	Chr16:34546210-34547086 (-)
FVB/NJ	ENSMUSG00205025333	lncRNA gene	Chr16:34520607-34521483 (-)
JF1/MsJ	ENSUMUG00000039979	lncRNA gene	Chr16:34788405-34789281 (-)
LP/J	ENSMUSG00230032335	lncRNA gene	Chr16:37118362-37119238 (-)
NOD/ShiLtJ	ENSMUSG00190023706	lncRNA gene	Chr16:34663178-34664054 (-)
NZO/HlLtJ	ENSMUSG00225039993	lncRNA gene	Chr16:40217668-40218544 (-)
PWK/PhJ	ENSLUMG00010029480	lncRNA gene	Chr16:34688278-34689153 (-)
SPRET/EiJ	ENSMSPG00010018130	lncRNA gene	Chr16:34655257-34656125 (-)
WSB/EiJ	ENSIUOG00005027020	lncRNA gene	Chr16:34736333-34737209 (-)

Homology

• Gene Tree
  Gm41452
  

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000120015 (Evidence)
• NCBI Gene
  105246110

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120015	Ensembl Gene Model | MGI Sequence Detail	7309	C57BL/6J
transcript	ENSMUST00000241035	Ensembl | MGI Sequence Detail	1003	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41452:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141053	Chr16:37663891-37663912 (-)	6,055 bp