Gm41442 Gene Detail

Summary

• Symbol
  Gm41442
• Name
  predicted gene, 41442

• Feature Type
  lncRNA gene
• IDs
  MGI:5624327
  NCBI Gene: 105246099
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:31052237-31070771 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  509 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624327	lncRNA gene	Chr16:31052237-31128306 (+)
129S1/SvImJ	ENSMUSG00200036756	lncRNA gene	Chr16:28064206-28078943 (+)
A/J	ENSMUSG00195029447	lncRNA gene	Chr16:27616397-27631150 (+)
AKR/J	ENSMUSG00220035223	lncRNA gene	Chr16:27917513-27932257 (+)
BALB/cJ	ENSMUSG00180031473	lncRNA gene	Chr16:27837431-27852184 (+)
C3H/HeJ	ENSMUSG00175040708	lncRNA gene	Chr16:27987907-28002634 (+)
C57BL/6NJ	ENSMUSG00215028352	lncRNA gene	Chr16:27857394-27872122 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037109	lncRNA gene	Chr16:28257390-28272134 (+)
CBA/J	ENSMUSG00210039062	lncRNA gene	Chr16:28029928-28044659 (+)
DBA/2J	ENSMUSG00185019471	lncRNA gene	Chr16:27945382-27960114 (+)
FVB/NJ	ENSMUSG00205026114	lncRNA gene	Chr16:27953068-27967824 (+)
JF1/MsJ	ENSUMUG00000043339	lncRNA gene	Chr16:28102403-28116962 (+)
LP/J	ENSMUSG00230034230	lncRNA gene	Chr16:30514178-30528907 (+)
NOD/ShiLtJ	ENSMUSG00190039721	lncRNA gene	Chr16:28131600-28146351 (+)
NZO/HlLtJ	ENSMUSG00225040525	lncRNA gene	Chr16:33749591-33764343 (+)
PWK/PhJ	ENSLUMG00010034851	lncRNA gene	Chr16:27936656-27951194 (+)
SPRET/EiJ	ENSMSPG00010019038	lncRNA gene	Chr16:27914315-27928104 (+)
WSB/EiJ	ENSIUOG00005036623	lncRNA gene	Chr16:28110350-28125066 (+)

Homology

• Gene Tree
  Gm41442
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  4

• Ensembl
  ENSMUSG00000116946 (Evidence)
• NCBI Gene
  105246099

Representative Sequences			Length	Strain/Species
genomic	105246099	NCBI Gene Model | MGI Sequence Detail	18535	C57BL/6J
transcript	XR_004939336	RefSeq | MGI Sequence Detail	11549	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41442:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137886	Chr16:31053173-31053185 (+)	942 bp
Tssr4838	Chr16:31053205-31053221 (+)	976 bp
Tssr137887	Chr16:31054402-31054411 (+)	2,170 bp