Gm41409 Gene Detail

Summary

• Symbol
  Gm41409
• Name
  predicted gene, 41409

• Feature Type
  lncRNA gene
• IDs
  MGI:5624294
  NCBI Gene: 105246058
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:3593606-3596221 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624294	lncRNA gene	Chr16:3588318-3603593 (+)
129S1/SvImJ	ENSMUSG00200011821	lncRNA gene	Chr16:579685-594960 (+)
A/J	ENSMUSG00195012032	lncRNA gene	Chr16:143231-151136 (+)
AKR/J	ENSMUSG00220017277	lncRNA gene	Chr16:431003-446280 (+)
BALB/cJ	ENSMUSG00180008552	lncRNA gene	Chr16:380589-395868 (+)
C3H/HeJ	ENSMUSG00175029793	lncRNA gene	Chr16:571911-587187 (+)
C57BL/6NJ	ENSMUSG00215022674	lncRNA gene	Chr16:253128-268404 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031917	lncRNA gene	Chr16:459705-467748 (+)
CBA/J	ENSMUSG00210012073	lncRNA gene	Chr16:589236-604509 (+)
DBA/2J	ENSMUSG00185010085	lncRNA gene	Chr16:534448-549723 (+)
FVB/NJ	ENSMUSG00205012747	lncRNA gene	Chr16:455747-471042 (+)
JF1/MsJ	ENSUMUG00000038023	lncRNA gene	Chr16:558396-566402 (+)
LP/J	ENSMUSG00230012080	lncRNA gene	Chr16:3075477-3090752 (+)
NOD/ShiLtJ	ENSMUSG00190027257	lncRNA gene	Chr16:609823-625096 (+)
NZO/HlLtJ	ENSMUSG00225023143	lncRNA gene	Chr16:6317814-6333089 (+)
PWK/PhJ	ENSLUMG00010018192	lncRNA gene	Chr16:436784-444833 (+)
SPRET/EiJ	ENSMSPG00010018553	lncRNA gene	Chr16:393141-408420 (+)
WSB/EiJ	ENSIUOG00005017075	lncRNA gene	Chr16:585295-593181 (+)

Homology

• Gene Tree
  Gm41409
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000115961 (Evidence)
• NCBI Gene
  105246058

Representative Sequences			Length	Strain/Species
genomic	105246058	NCBI Gene Model | MGI Sequence Detail	2616	C57BL/6J
transcript	AK163292	GenBank | ENA | DDBJ | MGI Sequence Detail	1081	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;