Gm41396 Gene Detail

Summary

• Symbol
  Gm41396
• Name
  predicted gene, 41396
• Synonyms
  Gm41397

• Feature Type
  lncRNA gene
• IDs
  MGI:5624281
  NCBI Gene: 105246035
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:98815850-98838393 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  666 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624281	lncRNA gene	Chr15:98815466-98849671 (+)
129S1/SvImJ	ENSMUSG00200052182	lncRNA gene	Chr15:96020299-96026485 (+)
A/J	ENSMUSG00195045644	lncRNA gene	Chr15:95901052-95907260 (+)
AKR/J	ENSMUSG00220049533	lncRNA gene	Chr15:95906431-95912653 (+)
BALB/cJ	ENSMUSG00180046461	lncRNA gene	Chr15:95807711-95813941 (+)
C3H/HeJ	ENSMUSG00175047624	lncRNA gene	Chr15:96081102-96087310 (+)
C57BL/6NJ	ENSMUSG00215051987	lncRNA gene	Chr15:95870335-95876567 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047024	lncRNA gene	Chr15:95344618-95350452 (+)
CBA/J	ENSMUSG00210032480	lncRNA gene	Chr15:95866007-95872239 (+)
DBA/2J	ENSMUSG00185042377	lncRNA gene	Chr15:95909638-95915818 (+)
FVB/NJ	ENSMUSG00205048163	lncRNA gene	Chr15:95605775-95611969 (+)
JF1/MsJ	ENSUMUG00000057100	lncRNA gene	Chr15:95376694-95382718 (+)
LP/J	ENSMUSG00230040649	lncRNA gene	Chr15:99244008-99250192 (+)
NOD/ShiLtJ	ENSMUSG00190049623	lncRNA gene	Chr15:95885482-95891710 (+)
NZO/HlLtJ	ENSMUSG00225043825	lncRNA gene	Chr15:99507319-99513547 (+)
PWK/PhJ	ENSLUMG00010051025	lncRNA gene	Chr15:95576421-95582615 (+)
SPRET/EiJ	ENSMSPG00010050059	lncRNA gene	Chr15:97397492-97403397 (+)
WSB/EiJ	ENSIUOG00005040131	lncRNA gene	Chr15:95997959-96004168 (+)

Homology

• Gene Tree
  Gm41396
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  48
• Chemically induced (other)
  1
• Gene trapped
  47
• Genomic Mutations
  1 involving Gm41396
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  2

• Ensembl
  ENSMUSG00000116223 (Evidence)
• NCBI Gene
  105246035

Representative Sequences			Length	Strain/Species
genomic	105246035	NCBI Gene Model | MGI Sequence Detail	22544	C57BL/6J
transcript	AK043360	GenBank | ENA | DDBJ | MGI Sequence Detail	1115	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5624282

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm41396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132968	Chr15:98815532-98815579 (+)	-294 bp
Tssr132969	Chr15:98832507-98832570 (+)	16,689 bp