Gm41386 Gene Detail

Summary

• Symbol
  Gm41386
• Name
  predicted gene, 41386

• Feature Type
  lncRNA gene
• IDs
  MGI:5624271
  NCBI Gene: 105246024
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:93603098-93610650 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624271	lncRNA gene	Chr15:93595296-93610650 (-)
129S1/SvImJ	ENSMUSG00200035952	lncRNA gene	Chr15:90748134-90755612 (-)
A/J	ENSMUSG00195021470	lncRNA gene	Chr15:90645168-90652645 (-)
AKR/J	ENSMUSG00220033057	lncRNA gene	Chr15:90695854-90703330 (-)
BALB/cJ	ENSMUSG00180015440	lncRNA gene	Chr15:90531560-90539016 (-)
C3H/HeJ	ENSMUSG00175029961	lncRNA gene	Chr15:90831503-90838980 (-)
C57BL/6NJ	ENSMUSG00215031413	lncRNA gene	Chr15:90639775-90647231 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031453	lncRNA gene	Chr15:90129566-90137054 (-)
CBA/J	ENSMUSG00210013328	lncRNA gene	Chr15:90612950-90620427 (-)
DBA/2J	ENSMUSG00185022968	lncRNA gene	Chr15:90661092-90668569 (-)
FVB/NJ	ENSMUSG00205037616	lncRNA gene	Chr15:90364970-90372448 (-)
JF1/MsJ	ENSUMUG00000042468	lncRNA gene	Chr15:90163997-90171443 (-)
LP/J	ENSMUSG00230041976	lncRNA gene	Chr15:93986131-93993609 (-)
NOD/ShiLtJ	ENSMUSG00190031835	lncRNA gene	Chr15:90655042-90662519 (-)
NZO/HlLtJ	ENSMUSG00225044405	lncRNA gene	Chr15:94284326-94291803 (-)
PWK/PhJ	ENSLUMG00010035142	lncRNA gene	Chr15:90313016-90320493 (-)
SPRET/EiJ	ENSMSPG00010014628	lncRNA gene	Chr15:92123964-92131394 (-)
WSB/EiJ	ENSIUOG00005011320	lncRNA gene	Chr15:90751198-90758758 (-)

Homology

• Gene Tree
  Gm41386
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41386
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  7

• Ensembl
  ENSMUSG00000116190 (Evidence)
• NCBI Gene
  105246024

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116190	Ensembl Gene Model | MGI Sequence Detail	7553	C57BL/6J
transcript	ENSMUST00000265834	Ensembl | MGI Sequence Detail	1096	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41386:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135983	Chr15:93610612-93610631 (-)	28 bp