Gm41381 Gene Detail

Summary

• Symbol
  Gm41381
• Name
  predicted gene, 41381

• Feature Type
  lncRNA gene
• IDs
  MGI:5624266
  NCBI Gene: 105246017
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr15:89382152-89383727 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624266	lncRNA gene	Chr15:89382152-89383727 (+)
129S1/SvImJ	ENSMUSG00200035737	lncRNA gene	Chr15:86534486-86536006 (+)
A/J	ENSMUSG00195020381	lncRNA gene	Chr15:86456104-86457624 (+)
AKR/J	ENSMUSG00220031666	lncRNA gene	Chr15:86486783-86488303 (+)
BALB/cJ	ENSMUSG00180015339	lncRNA gene	Chr15:86309944-86311465 (+)
C3H/HeJ	ENSMUSG00175029444	lncRNA gene	Chr15:86642717-86644237 (+)
C57BL/6NJ	ENSMUSG00215030499	lncRNA gene	Chr15:86403415-86404935 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031614	lncRNA gene	Chr15:85907759-85909279 (+)
CBA/J	ENSMUSG00210013177	lncRNA gene	Chr15:86412149-86413669 (+)
DBA/2J	ENSMUSG00185022426	lncRNA gene	Chr15:86424107-86425626 (+)
FVB/NJ	ENSMUSG00205038432	lncRNA gene	Chr15:86184929-86186449 (+)
JF1/MsJ	ENSUMUG00000042635	lncRNA gene	Chr15:85990779-85992300 (+)
LP/J	ENSMUSG00230046950	lncRNA gene	Chr15:89774658-89776178 (+)
NOD/ShiLtJ	ENSMUSG00190029148	lncRNA gene	Chr15:86428535-86430055 (+)
NZO/HlLtJ	ENSMUSG00225051284	lncRNA gene	Chr15:90091270-90092790 (+)
PWK/PhJ	ENSLUMG00010034168	lncRNA gene	Chr15:86143295-86144814 (+)
SPRET/EiJ	ENSMSPG00010014847	lncRNA gene	Chr15:87849878-87851398 (+)
WSB/EiJ	ENSIUOG00005011611	lncRNA gene	Chr15:86518511-86520031 (+)

Homology

• Gene Tree
  Gm41381
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41381
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118456 (Evidence)
• NCBI Gene
  105246017

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118456	Ensembl Gene Model | MGI Sequence Detail	1576	C57BL/6J
transcript	ENSMUST00000238218	Ensembl | MGI Sequence Detail	406	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41381:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132682	Chr15:89382122-89382137 (+)	-22 bp
Tssr132683	Chr15:89382162-89382171 (+)	15 bp
Tssr132684	Chr15:89382186-89382197 (+)	40 bp
Tssr132685	Chr15:89382205-89382215 (+)	58 bp
Tssr132686	Chr15:89382216-89382249 (+)	81 bp
Tssr132687	Chr15:89382251-89382272 (+)	110 bp