Gm41361 Gene Detail

Summary

• Symbol
  Gm41361
• Name
  predicted gene, 41361

• Feature Type
  lncRNA gene
• IDs
  MGI:5624246
  NCBI Gene: 105245994
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:79912932-79929191 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  606 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624246	lncRNA gene	Chr15:79896532-79929191 (+)
129S1/SvImJ	ENSMUSG00200053871	lncRNA gene	Chr15:77001124-77031465 (+)
A/J	ENSMUSG00195052088	lncRNA gene	Chr15:76946939-76977002 (+)
AKR/J	ENSMUSG00220053101	lncRNA gene	Chr15:76990072-77020146 (+)
BALB/cJ	ENSMUSG00180053594	lncRNA gene	Chr15:76823980-76854051 (+)
C3H/HeJ	ENSMUSG00175053565	lncRNA gene	Chr15:77135141-77165205 (+)
C57BL/6NJ	ENSMUSG00215052732	lncRNA gene	Chr15:76906977-76937110 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048856	lncRNA gene	Chr15:76435154-76465267 (+)
CBA/J	ENSMUSG00210049862	lncRNA gene	Chr15:76910262-76940329 (+)
DBA/2J	ENSMUSG00185052033	lncRNA gene	Chr15:76920168-76950390 (+)
FVB/NJ	ENSMUSG00205052831	lncRNA gene	Chr15:76647494-76677569 (+)
JF1/MsJ	ENSUMUG00000056706	lncRNA gene	Chr15:76496404-76526558 (+)
LP/J	ENSMUSG00230052641	lncRNA gene	Chr15:80249513-80279849 (+)
NOD/ShiLtJ	ENSMUSG00190053983	lncRNA gene	Chr15:76927001-76957344 (+)
NZO/HlLtJ	ENSMUSG00225053852	lncRNA gene	Chr15:80585276-80615502 (+)
PWK/PhJ	ENSLUMG00010052522	lncRNA gene	Chr15:76717084-76747218 (+)
SPRET/EiJ	ENSMSPG00010050501	lncRNA gene	Chr15:78380259-78410804 (+)
WSB/EiJ	ENSIUOG00005050361	lncRNA gene	Chr15:76992968-77023080 (+)

Homology

• Gene Tree
  Gm41361
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41361
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3

• Ensembl
  ENSMUSG00000116125 (Evidence)
• NCBI Gene
  105245994

Representative Sequences			Length	Strain/Species
genomic	105245994	NCBI Gene Model | MGI Sequence Detail	16260	C57BL/6J
transcript	XR_004939008	RefSeq | MGI Sequence Detail	11449	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41361:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132154	Chr15:79926624-79926650 (+)	13,705 bp