Gm41341 Gene Detail

Summary

• Symbol
  Gm41341
• Name
  predicted gene, 41341

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5624226
  NCBI Gene: 105245971
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:68748639-68748911 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624226	lncRNA gene	Chr15:68748639-68748911 (+)
129S1/SvImJ	ENSMUSG00200020014	lncRNA gene	Chr15:65755189-65846455 (+)
A/J	ENSMUSG00195028495	lncRNA gene	Chr15:65820912-65912177 (+)
AKR/J	ENSMUSG00220022175	lncRNA gene	Chr15:65674794-65766249 (+)
BALB/cJ	ENSMUSG00180024742	lncRNA gene	Chr15:65606722-65711068 (+)
C3H/HeJ	ENSMUSG00175005452	lncRNA gene	Chr15:65953007-66057344 (+)
C57BL/6NJ	ENSMUSG00215006282	lncRNA gene	Chr15:65656492-65747757 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020212	lncRNA gene	Chr15:65355870-65446707 (+)
CBA/J	ENSMUSG00210025491	lncRNA gene	Chr15:65725128-65843583 (+)
DBA/2J	ENSMUSG00185025464	lncRNA gene	Chr15:65703805-65794652 (+)
FVB/NJ	ENSMUSG00205011324	lncRNA gene	Chr15:65405070-65502342 (+)
JF1/MsJ	ENSUMUG00000019414	lncRNA gene	Chr15:65394324-65492285 (+)
LP/J	ENSMUSG00230025177	lncRNA gene	Chr15:69039286-69130543 (+)
NOD/ShiLtJ	ENSMUSG00190004844	lncRNA gene	Chr15:65755402-65862966 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011080	lncRNA gene	Chr15:65672752-65770236 (+)
SPRET/EiJ	ENSMSPG00010004471	lncRNA gene	Chr15:67171720-67285850 (+)
WSB/EiJ	ENSIUOG00005020762	lncRNA gene	Chr15:65775267-65872262 (+)

Homology

• Gene Tree
  Gm41341
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm41341
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000069996 (Evidence)
• NCBI Gene
  105245971

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069996	Ensembl Gene Model | MGI Sequence Detail	273	C57BL/6J
transcript	ENSMUST00000093430	Ensembl | MGI Sequence Detail	273	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17