Gm41335 Gene Detail

Summary

• Symbol
  Gm41335
• Name
  predicted gene, 41335

• Feature Type
  lncRNA gene
• IDs
  MGI:5624220
  NCBI Gene: 105245964
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:63225090-63228875 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624220	lncRNA gene	Chr15:63048687-63590160 (-)
129S1/SvImJ	ENSMUSG00200031515	lncRNA gene	Chr15:60080347-60622954 (-)
A/J	ENSMUSG00195006654	lncRNA gene	Chr15:60111504-60646569 (-)
AKR/J	ENSMUSG00220022066	lncRNA gene	Chr15:60027224-60563015 (-)
BALB/cJ	ENSMUSG00180010142	lncRNA gene	Chr15:60013126-60555706 (-)
C3H/HeJ	ENSMUSG00175005355	lncRNA gene	Chr15:60304495-60847148 (-)
C57BL/6NJ	ENSMUSG00215018568	lncRNA gene	Chr15:60031135-60573823 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007332	lncRNA gene	Chr15:59848204-60398390 (-)
CBA/J	ENSMUSG00210007408	lncRNA gene	Chr15:60136176-60678780 (-)
DBA/2J	ENSMUSG00185027095	lncRNA gene	Chr15:60078925-60614050 (-)
FVB/NJ	ENSMUSG00205007653	lncRNA gene	Chr15:59841292-60372837 (-)
JF1/MsJ	ENSUMUG00000041664	lncRNA gene	Chr15:59843537-60386017 (-)
LP/J	ENSMUSG00230026280	lncRNA gene	Chr15:63407086-63949677 (-)
NOD/ShiLtJ	ENSMUSG00190018154	lncRNA gene	Chr15:60119858-60662387 (-)
NZO/HlLtJ	ENSMUSG00225027444	lncRNA gene	Chr15:63689622-64232244 (-)
PWK/PhJ	ENSLUMG00010031427	lncRNA gene	Chr15:60147315-60695386 (-)
SPRET/EiJ	ENSMSPG00010027761	lncRNA gene	Chr15:61489086-62035733 (-)
WSB/EiJ	ENSIUOG00005006699	lncRNA gene	Chr15:60119952-60672579 (-)

Homology

• Gene Tree
  Gm41335
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  2
• Transposon induced
  9
• Genomic Mutations
  11 involving Gm41335
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000115520 (Evidence)
• NCBI Gene
  105245964

Representative Sequences			Length	Strain/Species
genomic	105245964	NCBI Gene Model | MGI Sequence Detail	3786	C57BL/6J
transcript	XR_875379	RefSeq | MGI Sequence Detail	678	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:257739 Bahr C, et al., A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies. Nature. 2018 Jan 25;553(7689):515-520