Gm41331 Gene Detail

Summary

• Symbol
  Gm41331
• Name
  predicted gene, 41331

• Feature Type
  lncRNA gene
• IDs
  MGI:5624216
  NCBI Gene: 105245960
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:60013623-60059597 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1699 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624216	lncRNA gene	Chr15:60009373-60059597 (+)
129S1/SvImJ	ENSMUSG00200031031	lncRNA gene	Chr15:57046005-57059180 (+)
A/J	ENSMUSG00195006358	lncRNA gene	Chr15:57069896-57077939 (+)
AKR/J	ENSMUSG00220021470	lncRNA gene	Chr15:57046378-57054423 (+)
BALB/cJ	ENSMUSG00180009346	lncRNA gene	Chr15:56991063-56999100 (+)
C3H/HeJ	ENSMUSG00175005253	lncRNA gene	Chr15:57244922-57252962 (+)
C57BL/6NJ	ENSMUSG00215012026	lncRNA gene	Chr15:56990241-56998280 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007012	lncRNA gene	Chr15:56854996-56863028 (+)
CBA/J	ENSMUSG00210007187	lncRNA gene	Chr15:57073010-57081050 (+)
DBA/2J	ENSMUSG00185026774	lncRNA gene	Chr15:57039726-57047771 (+)
FVB/NJ	ENSMUSG00205007411	lncRNA gene	Chr15:56809110-56817151 (+)
JF1/MsJ	ENSUMUG00000030129	lncRNA gene	Chr15:56835937-56843969 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190018448	lncRNA gene	Chr15:57069729-57077764 (+)
NZO/HlLtJ	ENSMUSG00225028728	lncRNA gene	Chr15:60669027-60677066 (+)
PWK/PhJ	ENSLUMG00010031731	lncRNA gene	Chr15:57125738-57133636 (+)
SPRET/EiJ	ENSMSPG00010025343	lncRNA gene	Chr15:58335135-58343178 (+)
WSB/EiJ	ENSIUOG00005006443	lncRNA gene	Chr15:57160397-57173583 (+)

Homology

• Gene Tree
  Gm41331
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm41331
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  2

• Ensembl
  ENSMUSG00000120356 (Evidence)
• NCBI Gene
  105245960

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120356	Ensembl Gene Model | MGI Sequence Detail	45975	C57BL/6J
transcript	ENSMUST00000244732	Ensembl | MGI Sequence Detail	1009	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm41331:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131397	Chr15:60013752-60013757 (+)	132 bp
Tssr131398	Chr15:60013924-60013940 (+)	309 bp