Gm41311 Gene Detail

Summary

• Symbol
  Gm41311
• Name
  predicted gene, 41311

• Feature Type
  lncRNA gene
• IDs
  MGI:5624196
  NCBI Gene: 105245939
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:40206662-40214261 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  301 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624196	lncRNA gene	Chr15:40206653-40266839 (+)
129S1/SvImJ	ENSMUSG00200027778	lncRNA gene	Chr15:37159620-37209256 (+)
A/J	ENSMUSG00195035994	lncRNA gene	Chr15:37145337-37195385 (+)
AKR/J	ENSMUSG00220030793	lncRNA gene	Chr15:37032228-37082275 (+)
BALB/cJ	ENSMUSG00180034832	lncRNA gene	Chr15:37123577-37173629 (+)
C3H/HeJ	ENSMUSG00175029296	lncRNA gene	Chr15:37284891-37334958 (+)
C57BL/6NJ	ENSMUSG00215025532	lncRNA gene	Chr15:37118061-37168110 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011411	lncRNA gene	Chr15:37111269-37161269 (+)
CBA/J	ENSMUSG00210018451	lncRNA gene	Chr15:37238998-37289057 (+)
DBA/2J	ENSMUSG00185036220	lncRNA gene	Chr15:37219820-37269879 (+)
FVB/NJ	ENSMUSG00205034537	lncRNA gene	Chr15:37075043-37125086 (+)
JF1/MsJ	ENSUMUG00000034403	lncRNA gene	Chr15:37058376-37107996 (+)
LP/J	ENSMUSG00230012990	lncRNA gene	Chr15:40542212-40591844 (+)
NOD/ShiLtJ	ENSMUSG00190033728	lncRNA gene	Chr15:37152739-37202792 (+)
NZO/HlLtJ	ENSMUSG00225038044	lncRNA gene	Chr15:40898106-40948157 (+)
PWK/PhJ	ENSLUMG00010034370	lncRNA gene	Chr15:37230995-37280694 (+)
SPRET/EiJ	ENSMSPG00010014150	lncRNA gene	Chr15:37955171-38017225 (+)
WSB/EiJ	ENSIUOG00005035125	lncRNA gene	Chr15:37190331-37240353 (+)

Homology

• Gene Tree
  Gm41311
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41311
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000115820 (Evidence)
• NCBI Gene
  105245939

Representative Sequences			Length	Strain/Species
genomic	105245939	NCBI Gene Model | MGI Sequence Detail	7600	C57BL/6J
transcript	XR_875320	RefSeq | MGI Sequence Detail	682	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17