Gm41300 Gene Detail

Summary

• Symbol
  Gm41300
• Name
  predicted gene, 41300

• Feature Type
  lncRNA gene
• IDs
  MGI:5624185
  NCBI Gene: 105245920
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:36917149-36932012 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  669 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624185	lncRNA gene	Chr15:36906850-36932033 (-)
129S1/SvImJ	ENSMUSG00200028368	lncRNA gene	Chr15:33915065-33943040 (-)
A/J	ENSMUSG00195036418	lncRNA gene	Chr15:33845486-33870780 (-)
AKR/J	ENSMUSG00220029242	lncRNA gene	Chr15:33759426-33784727 (-)
BALB/cJ	ENSMUSG00180032692	lncRNA gene	Chr15:33807629-33832723 (-)
C3H/HeJ	ENSMUSG00175027343	lncRNA gene	Chr15:34011921-34037015 (-)
C57BL/6NJ	ENSMUSG00215020953	lncRNA gene	Chr15:33819777-33844870 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011427	lncRNA gene	Chr15:33847118-33871820 (-)
CBA/J	ENSMUSG00210018030	lncRNA gene	Chr15:33926343-33951442 (-)
DBA/2J	ENSMUSG00185034240	lncRNA gene	Chr15:33907186-33932280 (-)
FVB/NJ	ENSMUSG00205035328	lncRNA gene	Chr15:33813926-33839224 (-)
JF1/MsJ	ENSUMUG00000035775	lncRNA gene	Chr15:33791380-33819395 (-)
LP/J	ENSMUSG00230012559	lncRNA gene	Chr15:37296289-37324262 (-)
NOD/ShiLtJ	ENSMUSG00190030497	lncRNA gene	Chr15:33888435-33913548 (-)
NZO/HlLtJ	ENSMUSG00225031918	lncRNA gene	Chr15:37598644-37623737 (-)
PWK/PhJ	ENSLUMG00010034188	lncRNA gene	Chr15:33968386-33993630 (-)
SPRET/EiJ	ENSMSPG00010013780	lncRNA gene	Chr15:34613298-34638443 (-)
WSB/EiJ	ENSIUOG00005033217	lncRNA gene	Chr15:33928513-33953206 (-)

Homology

• Gene Tree
  Gm41300
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41300
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000115430 (Evidence)
• NCBI Gene
  105245920

Representative Sequences			Length	Strain/Species
genomic	105245920	NCBI Gene Model | MGI Sequence Detail	14864	C57BL/6J
transcript	XR_875158	RefSeq | MGI Sequence Detail	1733	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm41300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134074	Chr15:36931905-36931954 (-)	82 bp