Gm41291 Gene Detail

Summary

• Symbol
  Gm41291
• Name
  predicted gene, 41291

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5624176
  NCBI Gene: 105245911
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:34081888-34083373 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624176	protein coding gene	Chr15:34078822-34083373 (-)
129S1/SvImJ	ENSMUSG00200028333	lncRNA gene	Chr15:31072806-31073679 (-)
A/J	ENSMUSG00195037527	lncRNA gene	Chr15:31002254-31003126 (-)
AKR/J	ENSMUSG00220030550	lncRNA gene	Chr15:30905074-30905946 (-)
AKR/J	ENSMUSG00220010062	lncRNA gene	Chr1:31333458-31334267 (+)
BALB/cJ	ENSMUSG00180033231	lncRNA gene	Chr15:30958906-30959778 (-)
C3H/HeJ	ENSMUSG00175027178	lncRNA gene	Chr15:31145384-31146257 (-)
C57BL/6NJ	ENSMUSG00215020124	lncRNA gene	Chr15:30990669-30991542 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011291	lncRNA gene	Chr15:31023043-31023916 (-)
CBA/J	ENSMUSG00210018131	lncRNA gene	Chr15:31096017-31096890 (-)
DBA/2J	ENSMUSG00185034635	lncRNA gene	Chr15:31080762-31081635 (-)
FVB/NJ	ENSMUSG00205031969	lncRNA gene	Chr15:30960071-30960943 (-)
JF1/MsJ	ENSUMUG00000036044	lncRNA gene	Chr15:30991871-30992744 (-)
LP/J	ENSMUSG00230013307	lncRNA gene	Chr15:34469231-34470104 (-)
NOD/ShiLtJ	ENSMUSG00190031375	lncRNA gene	Chr15:31036568-31037441 (-)
NZO/HlLtJ	ENSMUSG00225032282	lncRNA gene	Chr15:34772242-34773115 (-)
PWK/PhJ	ENSLUMG00010034049	lncRNA gene	Chr15:31133311-31134184 (-)
SPRET/EiJ	ENSMSPG00010013303	lncRNA gene	Chr15:31745832-31746705 (-)
WSB/EiJ	ENSIUOG00005032456	lncRNA gene	Chr15:31097854-31098727 (-)

Homology

• Gene Tree
  Gm41291
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm41291
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000121114 (Evidence)
• NCBI Gene
  105245911

Representative Sequences			Length	Strain/Species
genomic	105245911	NCBI Gene Model | MGI Sequence Detail	1486	C57BL/6J
transcript	XM_011245387	RefSeq | MGI Sequence Detail	1486	C57BL/6J
polypeptide	XP_011243689	RefSeq | MGI Sequence Detail	177	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm41291:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133962	Chr15:34083386-34083409 (-)	-25 bp
Tssr133961	Chr15:34082755-34082783 (-)	604 bp
Tssr133960	Chr15:34082721-34082739 (-)	643 bp