Gm41290 Gene Detail

Summary

• Symbol
  Gm41290
• Name
  predicted gene, 41290

• Feature Type
  lncRNA gene
• IDs
  MGI:5624175
  NCBI Gene: 105245910
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:34022306-34037921 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  802 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624175	lncRNA gene	Chr15:34022141-34083815 (-)
129S1/SvImJ	ENSMUSG00200028303	lncRNA gene	Chr15:31011947-31028411 (-)
A/J	ENSMUSG00195038002	lncRNA gene	Chr15:30935641-30957770 (-)
AKR/J	ENSMUSG00220028794	lncRNA gene	Chr15:30844795-30860592 (-)
BALB/cJ	ENSMUSG00180033380	lncRNA gene	Chr15:30892298-30914418 (-)
C3H/HeJ	ENSMUSG00175027012	lncRNA gene	Chr15:31085599-31101393 (-)
C57BL/6NJ	ENSMUSG00215020490	lncRNA gene	Chr15:30930894-30946685 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011108	lncRNA gene	Chr15:30956682-30978787 (-)
CBA/J	ENSMUSG00210018375	lncRNA gene	Chr15:31036243-31052039 (-)
DBA/2J	ENSMUSG00185035237	lncRNA gene	Chr15:31020978-31036772 (-)
FVB/NJ	ENSMUSG00205030292	lncRNA gene	Chr15:30893475-30915606 (-)
JF1/MsJ	ENSUMUG00000035300	lncRNA gene	Chr15:30931025-30947492 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190033105	lncRNA gene	Chr15:30975708-30992169 (-)
NZO/HlLtJ	ENSMUSG00225032285	lncRNA gene	Chr15:34712479-34728270 (-)
PWK/PhJ	ENSLUMG00010032858	lncRNA gene	Chr15:31074875-31091311 (-)
SPRET/EiJ	ENSMSPG00010013609	lncRNA gene	Chr15:31675268-31696446 (-)
WSB/EiJ	ENSIUOG00005032734	lncRNA gene	Chr15:31031499-31053626 (-)

Homology

• Gene Tree
  Gm41290
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm41290
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000115428 (Evidence)
• NCBI Gene
  105245910

Representative Sequences			Length	Strain/Species
genomic	105245910	NCBI Gene Model | MGI Sequence Detail	15616	C57BL/6J
transcript	XR_875114	RefSeq | MGI Sequence Detail	1689	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9