Gm41289 Gene Detail

Summary

• Symbol
  Gm41289
• Name
  predicted gene, 41289

• Feature Type
  lncRNA gene
• IDs
  MGI:5624174
  NCBI Gene: 105245909
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:32757569-32773298 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  783 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624174	lncRNA gene	Chr15:32754464-32773430 (-)
129S1/SvImJ	ENSMUSG00200028125	lncRNA gene	Chr15:29850486-29866408 (-)
A/J	ENSMUSG00195014659	lncRNA gene	Chr15:29683435-29699177 (-)
AKR/J	ENSMUSG00220048130	lncRNA gene	Chr15:29574475-29590209 (-)
BALB/cJ	ENSMUSG00180005715	lncRNA gene	Chr15:29640185-29655924 (-)
C3H/HeJ	ENSMUSG00175004921	lncRNA gene	Chr15:29819482-29835276 (-)
C57BL/6NJ	ENSMUSG00215005375	lncRNA gene	Chr15:29669182-29684920 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015285	lncRNA gene	Chr15:29754869-29780001 (-)
CBA/J	ENSMUSG00210024821	lncRNA gene	Chr15:29773142-29788936 (-)
DBA/2J	ENSMUSG00185023928	lncRNA gene	Chr15:29758441-29774235 (-)
FVB/NJ	ENSMUSG00205014991	lncRNA gene	Chr15:29640510-29656252 (-)
JF1/MsJ	ENSUMUG00000014079	lncRNA gene	Chr15:29769242-29785178 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190012527	lncRNA gene	Chr15:29744820-29760553 (-)
NZO/HlLtJ	ENSMUSG00225032324	lncRNA gene	Chr15:33451588-33467324 (-)
PWK/PhJ	ENSLUMG00010022806	lncRNA gene	Chr15:29927415-29943286 (-)
SPRET/EiJ	ENSMSPG00010024083	lncRNA gene	Chr15:30466478-30481658 (-)
WSB/EiJ	ENSIUOG00005021527	lncRNA gene	Chr15:29776208-29791972 (-)

Homology

• Gene Tree
  Gm41289
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41289
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000115749 (Evidence)
• NCBI Gene
  105245909

Representative Sequences			Length	Strain/Species
genomic	105245909	NCBI Gene Model | MGI Sequence Detail	15730	C57BL/6J
transcript	NR_155440	RefSeq | MGI Sequence Detail	429	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm41289:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133952	Chr15:32767600-32767627 (-)	5,684 bp