Gm41225 Gene Detail

Summary

• Symbol
  Gm41225
• Name
  predicted gene, 41225

• Feature Type
  lncRNA gene
• IDs
  MGI:5624110
  NCBI Gene: 105245836
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:88873485-88998360 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4619 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624110	lncRNA gene	Chr14:88873437-89001291 (+)
129S1/SvImJ	ENSMUSG00200013368	lncRNA gene	Chr14:77338640-77500259 (+)
A/J	ENSMUSG00195011452	lncRNA gene	Chr14:77624807-77753124 (+)
AKR/J	ENSMUSG00220008467	lncRNA gene	Chr14:76985066-77122609 (+)
BALB/cJ	ENSMUSG00180010145	lncRNA gene	Chr14:77121546-77249865 (+)
C3H/HeJ	ENSMUSG00175009607	lncRNA gene	Chr14:78969976-79103229 (+)
C57BL/6NJ	ENSMUSG00215004757	lncRNA gene	Chr14:77087917-77215667 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002372	lncRNA gene	Chr14:78654628-78782842 (+)
CBA/J	ENSMUSG00210005062	lncRNA gene	Chr14:77658506-77786748 (+)
DBA/2J	ENSMUSG00185015268	lncRNA gene	Chr14:82777149-82917074 (+)
FVB/NJ	ENSMUSG00205010535	lncRNA gene	Chr14:76783848-76912161 (+)
JF1/MsJ	ENSUMUG00000013859	lncRNA gene	Chr14:93764086-93891865 (+)
LP/J	ENSMUSG00230005300	lncRNA gene	Chr14:94638269-94766001 (+)
NOD/ShiLtJ	ENSMUSG00190002490	lncRNA gene	Chr14:77335656-77463910 (+)
NZO/HlLtJ	ENSMUSG00225024776	lncRNA gene	Chr14:85030284-85171863 (+)
PWK/PhJ	ENSLUMG00010002099	lncRNA gene	Chr14:76644283-76772027 (+)
SPRET/EiJ	ENSMSPG00010000243	lncRNA gene	Chr14:80361347-80486019 (+)
WSB/EiJ	ENSIUOG00005004589	lncRNA gene	Chr14:76662093-76803164 (+)

Homology

• Gene Tree
  Gm41225
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41225
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000115623 (Evidence)
• NCBI Gene
  105245836

Representative Sequences			Length	Strain/Species
genomic	105245836	NCBI Gene Model | MGI Sequence Detail	124876	C57BL/6J
transcript	XR_874883	RefSeq | MGI Sequence Detail	220	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41225:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126856	Chr14:88873464-88873475 (+)	-15 bp