Gm41178 Gene Detail

Summary

• Symbol
  Gm41178
• Name
  predicted gene, 41178

• Feature Type
  lncRNA gene
• IDs
  MGI:5624063
  NCBI Gene: 105245786
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:65533901-65536635 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5624063	lncRNA gene	Chr14:65533896-65536839 (-)
129S1/SvImJ	ENSMUSG00200031729	lncRNA gene	Chr14:54132915-54135857 (-)
A/J	ENSMUSG00195014720	lncRNA gene	Chr14:54310423-54313362 (-)
AKR/J	ENSMUSG00220033186	lncRNA gene	Chr14:53650937-53653876 (-)
BALB/cJ	ENSMUSG00180036086	lncRNA gene	Chr14:53926615-53929550 (-)
C3H/HeJ	ENSMUSG00175041660	lncRNA gene	Chr14:55669299-55672241 (-)
C57BL/6NJ	ENSMUSG00215028498	lncRNA gene	Chr14:53866723-53869673 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040499	lncRNA gene	Chr14:55563961-55567099 (-)
CBA/J	ENSMUSG00210042627	lncRNA gene	Chr14:54297799-54300738 (-)
DBA/2J	ENSMUSG00185033739	lncRNA gene	Chr14:59467120-59470062 (-)
FVB/NJ	ENSMUSG00205036297	lncRNA gene	Chr14:53813260-53816199 (-)
JF1/MsJ	ENSUMUG00000044760	lncRNA gene	Chr14:70632897-70636017 (-)
LP/J	ENSMUSG00230037681	lncRNA gene	Chr14:71496455-71499397 (-)
NOD/ShiLtJ	ENSMUSG00190043411	lncRNA gene	Chr14:54092514-54095453 (-)
NZO/HlLtJ	ENSMUSG00225040057	lncRNA gene	Chr14:61825479-61828418 (-)
PWK/PhJ	ENSLUMG00010040158	lncRNA gene	Chr14:53520233-53523168 (-)
SPRET/EiJ	ENSMSPG00010033297	lncRNA gene	Chr14:57010813-57013668 (-)
WSB/EiJ	ENSIUOG00005042227	lncRNA gene	Chr14:53527793-53530732 (-)

Homology

• Gene Tree
  Gm41178
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41178
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000120895 (Evidence)
• NCBI Gene
  105245786

Representative Sequences			Length	Strain/Species
genomic	105245786	NCBI Gene Model | MGI Sequence Detail	2735	C57BL/6J
transcript	XR_874723	RefSeq | MGI Sequence Detail	890	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41178:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129248	Chr14:65536797-65536835 (-)	-181 bp