Gm41113 Gene Detail

Summary

• Symbol
  Gm41113
• Name
  predicted gene, 41113

• Feature Type
  lncRNA gene
• IDs
  MGI:5623998
  NCBI Gene: 105245702
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:25378602-25384128 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  285 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623998	lncRNA gene	Chr14:25378497-25384128 (+)
129S1/SvImJ	ENSMUSG00200015673	lncRNA gene	Chr14:17190260-17190955 (+)
A/J	ENSMUSG00195022861	lncRNA gene	Chr14:18259881-18260576 (+)
AKR/J	ENSMUSG00220028321	lncRNA gene	Chr14:17357787-17358482 (+)
BALB/cJ	ENSMUSG00180042363	lncRNA gene	Chr14:17351772-17352467 (+)
C3H/HeJ	ENSMUSG00175023456	lncRNA gene	Chr14:17417666-17418361 (+)
C57BL/6NJ	ENSMUSG00215036430	lncRNA gene	Chr14:17658261-17658956 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034653	lncRNA gene	Chr14:17519881-17520568 (+)
CBA/J	ENSMUSG00210027158	lncRNA gene	Chr14:17652459-17653154 (+)
DBA/2J	ENSMUSG00185042200	lncRNA gene	Chr14:21939584-21940279 (+)
FVB/NJ	ENSMUSG00205041774	lncRNA gene	Chr14:17479407-17480102 (+)
JF1/MsJ	ENSUMUG00000048943	lncRNA gene	Chr14:29167489-29168176 (+)
LP/J	ENSMUSG00230040024	lncRNA gene	Chr14:29219303-29219998 (+)
NOD/ShiLtJ	ENSMUSG00190042287	lncRNA gene	Chr14:17660790-17661485 (+)
NZO/HlLtJ	ENSMUSG00225037945	lncRNA gene	Chr14:23444605-23445300 (+)
PWK/PhJ	ENSLUMG00010022013	lncRNA gene	Chr14:5784196-5784890 (+)
SPRET/EiJ	ENSMSPG00010031699	lncRNA gene	Chr14:19315795-19316486 (+)
WSB/EiJ	ENSIUOG00005035091	lncRNA gene	Chr14:17493652-17494346 (+)

Homology

• Gene Tree
  Gm41113
  

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000119950 (Evidence)
• NCBI Gene
  105245702

Representative Sequences			Length	Strain/Species
genomic	105245702	NCBI Gene Model | MGI Sequence Detail	5527	C57BL/6J
transcript	XR_874439	RefSeq | MGI Sequence Detail	3109	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41113:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124598	Chr14:25378511-25378521 (+)	-86 bp
Tssr124599	Chr14:25378660-25378685 (+)	71 bp