Gm41109 Gene Detail

Summary

• Symbol
  Gm41109
• Name
  predicted gene, 41109

• Feature Type
  lncRNA gene
• IDs
  MGI:5623994
  NCBI Gene: 105245698
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:24475232-24479890 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623994	lncRNA gene	Chr14:24460044-24479922 (-)
129S1/SvImJ	ENSMUSG00200015458	unclassified gene	Chr14:16288474-16293132 (-)
A/J	ENSMUSG00195022144	unclassified gene	Chr14:17356410-17361068 (-)
AKR/J	ENSMUSG00220027722	unclassified gene	Chr14:16456192-16460850 (-)
BALB/cJ	ENSMUSG00180041678	unclassified gene	Chr14:16448362-16453020 (-)
C3H/HeJ	ENSMUSG00175024727	unclassified gene	Chr14:16516143-16520801 (-)
C57BL/6NJ	ENSMUSG00215033311	unclassified gene	Chr14:16754685-16759343 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032900	unclassified gene	Chr14:16605280-16609929 (-)
CBA/J	ENSMUSG00210027892	unclassified gene	Chr14:16750936-16755594 (-)
DBA/2J	ENSMUSG00185044213	unclassified gene	Chr14:21036031-21040689 (-)
FVB/NJ	ENSMUSG00205039931	unclassified gene	Chr14:16577845-16582503 (-)
JF1/MsJ	ENSUMUG00000049520	unclassified gene	Chr14:28242535-28246301 (-)
LP/J	ENSMUSG00230040493	unclassified gene	Chr14:28317533-28322191 (-)
NOD/ShiLtJ	ENSMUSG00190037915	unclassified gene	Chr14:16745414-16750073 (-)
NZO/HlLtJ	ENSMUSG00225037557	unclassified gene	Chr14:22541137-22545795 (-)
PWK/PhJ	ENSLUMG00010022245	unclassified gene	Chr14:4874005-4878661 (-)
SPRET/EiJ	ENSMSPG00010032167	unclassified gene	Chr14:18402808-18407493 (-)
WSB/EiJ	ENSIUOG00005034566	unclassified gene	Chr14:16590220-16594881 (-)

Homology

• Gene Tree
  Gm41109
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000114207 (Evidence)
• NCBI Gene
  105245698

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114207	Ensembl Gene Model | MGI Sequence Detail	4659	C57BL/6J
transcript	AK133148	GenBank | ENA | DDBJ | MGI Sequence Detail	4661	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41109:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127749	Chr14:24479884-24479898 (-)	-1 bp