Gm41077 Gene Detail

Summary

• Symbol
  Gm41077
• Name
  predicted gene, 41077

• Feature Type
  lncRNA gene
• IDs
  MGI:5623962
  NCBI Gene: 105245650
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:120216929-120234670 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  474 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623962	lncRNA gene	Chr13:120216929-120235889 (+)
129S1/SvImJ	ENSMUSG00200003686	lncRNA gene	Chr13:114276703-114288971 (+)
A/J	ENSMUSG00195000990	lncRNA gene	Chr13:114959715-114973842 (+)
AKR/J	ENSMUSG00220012721	lncRNA gene	Chr13:113259473-113273602 (+)
BALB/cJ	ENSMUSG00180011080	lncRNA gene	Chr13:115372118-115386247 (+)
C3H/HeJ	ENSMUSG00175002353	lncRNA gene	Chr13:115469649-115481918 (+)
C57BL/6NJ	ENSMUSG00215000969	lncRNA gene	Chr13:115547907-115562038 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002605	lncRNA gene	Chr13:114527244-114540895 (+)
CBA/J	ENSMUSG00210017335	lncRNA gene	Chr13:114773419-114785687 (+)
DBA/2J	ENSMUSG00185031047	lncRNA gene	Chr13:118565888-118578156 (+)
FVB/NJ	ENSMUSG00205001283	lncRNA gene	Chr13:114440630-114454760 (+)
JF1/MsJ	ENSUMUG00000017908	lncRNA gene	Chr13:118007721-118019995 (+)
LP/J	ENSMUSG00230012708	lncRNA gene	Chr13:128849570-128861838 (+)
NOD/ShiLtJ	ENSMUSG00190039717	lncRNA gene	Chr13:25174302-25188432 (+)
NZO/HlLtJ	ENSMUSG00225031361	lncRNA gene	Chr13:120926808-120939076 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010006944	lncRNA gene	Chr13:115983500-115997252 (+)
WSB/EiJ	ENSIUOG00005013092	lncRNA gene	Chr13:114628239-114642109 (+)

Homology

• Gene Tree
  Gm41077
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000114369 (Evidence)
• NCBI Gene
  105245650

Representative Sequences			Length	Strain/Species
genomic	105245650	NCBI Gene Model | MGI Sequence Detail	17742	C57BL/6J
transcript	NR_168716	RefSeq | MGI Sequence Detail	5075	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm41077:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4203	Chr13:120216923-120216934 (+)	0 bp
Tssr4208	Chr13:120217648-120217684 (+)	737 bp
Tssr4209	Chr13:120229254-120229275 (+)	12,336 bp