Gm41002 Gene Detail

Summary

• Symbol
  Gm41002
• Name
  predicted gene, 41002

• Feature Type
  lncRNA gene
• IDs
  MGI:5623887
  NCBI Gene: 105245558
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:74107073-74111918 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623887	lncRNA gene	Chr13:74094440-74111936 (-)
129S1/SvImJ	ENSMUSG00200014301	lncRNA gene	Chr13:68498406-68503198 (-)
A/J	ENSMUSG00195029940	lncRNA gene	Chr13:69086481-69091275 (-)
AKR/J	ENSMUSG00220038727	lncRNA gene	Chr13:67676081-67680781 (-)
BALB/cJ	ENSMUSG00180025846	lncRNA gene	Chr13:69584850-69589642 (-)
C3H/HeJ	ENSMUSG00175008456	lncRNA gene	Chr13:69861629-69866329 (-)
C57BL/6NJ	ENSMUSG00215013237	lncRNA gene	Chr13:69650816-69655608 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012130	lncRNA gene	Chr13:69166606-69171306 (-)
CBA/J	ENSMUSG00210010018	lncRNA gene	Chr13:69186157-69190947 (-)
DBA/2J	ENSMUSG00185018651	lncRNA gene	Chr13:72877691-72882483 (-)
FVB/NJ	ENSMUSG00205031551	lncRNA gene	Chr13:68565056-68569848 (-)
JF1/MsJ	ENSUMUG00000031688	lncRNA gene	Chr13:72637253-72641953 (-)
LP/J	ENSMUSG00230026835	lncRNA gene	Chr13:82796500-82801293 (-)
NOD/ShiLtJ	ENSMUSG00190044822	lncRNA gene	Chr13:69185358-69190135 (-)
NZO/HlLtJ	ENSMUSG00225028469	lncRNA gene	Chr13:75303628-75308420 (-)
PWK/PhJ	ENSLUMG00010012427	lncRNA gene	Chr13:68676419-68681215 (-)
SPRET/EiJ	ENSMSPG00010032722	lncRNA gene	Chr13:69573543-69578290 (-)
WSB/EiJ	ENSIUOG00005025179	lncRNA gene	Chr13:68439259-68444051 (-)

Homology

• Gene Tree
  Gm41002
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm41002
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000113274 (Evidence)
• NCBI Gene
  105245558

Representative Sequences			Length	Strain/Species
genomic	105245558	NCBI Gene Model | MGI Sequence Detail	4846	C57BL/6J
transcript	XR_873671	RefSeq | MGI Sequence Detail	365	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm41002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123202	Chr13:74111847-74111856 (-)	66 bp