Gm40999 Gene Detail

Summary

• Symbol
  Gm40999
• Name
  predicted gene, 40999

• Feature Type
  lncRNA gene
• IDs
  MGI:5623884
  NCBI Gene: 105245555
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:71877747-71934008 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1719 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623884	lncRNA gene	Chr13:71857174-72105011 (-)
129S1/SvImJ	ENSMUSG00200013627	lncRNA gene	Chr13:66205561-66453046 (-)
A/J	ENSMUSG00195031108	lncRNA gene	Chr13:66835460-67082612 (-)
AKR/J	ENSMUSG00220041134	lncRNA gene	Chr13:65426867-65683880 (-)
BALB/cJ	ENSMUSG00180026184	lncRNA gene	Chr13:67333889-67581032 (-)
C3H/HeJ	ENSMUSG00175008698	lncRNA gene	Chr13:67621651-67878816 (-)
C57BL/6NJ	ENSMUSG00215013323	lncRNA gene	Chr13:67399473-67646992 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011995	lncRNA gene	Chr13:66919968-67173989 (-)
CBA/J	ENSMUSG00210009641	lncRNA gene	Chr13:66944665-67201791 (-)
DBA/2J	ENSMUSG00185019291	lncRNA gene	Chr13:70626247-70873756 (-)
FVB/NJ	ENSMUSG00205031787	lncRNA gene	Chr13:66318056-66565205 (-)
JF1/MsJ	ENSUMUG00000037654	lncRNA gene	Chr13:70367756-70625023 (-)
LP/J	ENSMUSG00230026891	lncRNA gene	Chr13:80544901-80792041 (-)
NOD/ShiLtJ	ENSMUSG00190038762	lncRNA gene	Chr13:66945177-67192663 (-)
NZO/HlLtJ	ENSMUSG00225028498	lncRNA gene	Chr13:73034773-73282271 (-)
PWK/PhJ	ENSLUMG00010012165	lncRNA gene	Chr13:66423310-66674133 (-)
SPRET/EiJ	ENSMSPG00010033690	lncRNA gene	Chr13:67306568-67557094 (-)
WSB/EiJ	ENSIUOG00005023185	lncRNA gene	Chr13:65854488-66112123 (-)

Homology

• Gene Tree
  Gm40999
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40999
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000114038 (Evidence)
• NCBI Gene
  105245555

Representative Sequences			Length	Strain/Species
genomic	105245555	NCBI Gene Model | MGI Sequence Detail	56262	C57BL/6J
transcript	AK034233	GenBank | ENA | DDBJ | MGI Sequence Detail	3386	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69