Gm40977 Gene Detail

Summary

• Symbol
  Gm40977
• Name
  predicted gene, 40977

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5623862
  NCBI Gene: 105245532
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:62250504-62259827 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623862	lncRNA gene	Chr13:62245557-62260153 (+)
129S1/SvImJ	ENSMUSG00200017298	lncRNA gene	Chr13:58756034-58845149 (-)
A/J	ENSMUSG00195046460	lncRNA gene	Chr13:58404188-58418691 (+)
AKR/J	ENSMUSG00220045269	lncRNA gene	Chr13:57851300-57865840 (+)
BALB/cJ	ENSMUSG00180019148	lncRNA gene	Chr13:58756216-58770614 (+)
BALB/cJ	ENSMUSG00180018841	lncRNA gene	Chr13:58863238-58877548 (+)
C3H/HeJ	ENSMUSG00175045450	lncRNA gene	Chr13:58653328-58667627 (+)
C57BL/6NJ	ENSMUSG00215040292	lncRNA gene	Chr13:58655731-58670030 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041879	lncRNA gene	Chr13:59083928-59089594 (+)
CAST/EiJ	ENSTCUG00005041854	lncRNA gene	Chr13:59515828-59533955 (-)
CAST/EiJ	ENSTCUG00005042758	lncRNA gene	Chr13:58726084-58740713 (+)
CBA/J	ENSMUSG00210044658	lncRNA gene	Chr13:58852843-58867144 (+)
DBA/2J	ENSMUSG00185018753	lncRNA gene	Chr13:59701465-59715764 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000038110	lncRNA gene	Chr13:59776736-59810601 (-)
JF1/MsJ	ENSUMUG00000042814	lncRNA gene	Chr13:58815214-58940997 (+)
JF1/MsJ	ENSUMUG00000037934	lncRNA gene	Chr13:59258019-59272335 (+)
JF1/MsJ	ENSUMUG00000012625	lncRNA gene	Chr12:19115286-19116095 (+)
LP/J	ENSMUSG00230036066	lncRNA gene	Chr13:69055726-69070035 (+)
NOD/ShiLtJ	ENSMUSG00190035781	lncRNA gene	Chr13:58621367-58635675 (+)
NOD/ShiLtJ	ENSMUSG00190041204	lncRNA gene	Chr13:58512721-58534250 (+)
NZO/HlLtJ	ENSMUSG00225047582	lncRNA gene	Chr13:62752725-62767024 (+)
PWK/PhJ	ENSLUMG00010024781	lncRNA gene	Chr13:58617486-58636800 (-)
PWK/PhJ	ENSLUMG00010024725	lncRNA gene	Chr13:58076871-58091365 (+)
SPRET/EiJ	ENSMSPG00010044365	lncRNA gene	Chr13:58284057-58296326 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm40977
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40977
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000113566 (Evidence)
• NCBI Gene
  105245532

Representative Sequences			Length	Strain/Species
genomic	105245532	NCBI Gene Model | MGI Sequence Detail	9324	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69