Gm40975 Gene Detail

Summary

• Symbol
  Gm40975
• Name
  predicted gene, 40975

• Feature Type
  lncRNA gene
• IDs
  MGI:5623860
  NCBI Gene: 105245530
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:61103033-61107762 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623860	lncRNA gene	Chr13:61101913-61107762 (+)
129S1/SvImJ	ENSMUSG00200017094	lncRNA gene	Chr13:58035308-58040051 (+)
A/J	ENSMUSG00195045159	lncRNA gene	Chr13:57492819-57497541 (+)
AKR/J	ENSMUSG00220045412	lncRNA gene	Chr13:57005616-57010343 (+)
BALB/cJ	ENSMUSG00180018708	lncRNA gene	Chr13:57717010-57721739 (+)
C3H/HeJ	ENSMUSG00175044192	lncRNA gene	Chr13:57503099-57507828 (+)
C57BL/6NJ	ENSMUSG00215039480	lncRNA gene	Chr13:57510810-57515539 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042587	lncRNA gene	Chr13:57904722-57909467 (+)
CBA/J	ENSMUSG00210043056	lncRNA gene	Chr13:57707923-57712652 (+)
DBA/2J	ENSMUSG00185018261	lncRNA gene	Chr13:58551023-58555752 (+)
FVB/NJ	ENSMUSG00205045987	lncRNA gene	Chr13:57318691-57323415 (+)
JF1/MsJ	ENSUMUG00000035925	lncRNA gene	Chr13:57892072-57896811 (+)
LP/J	ENSMUSG00230034561	lncRNA gene	Chr13:67908210-67912929 (+)
NOD/ShiLtJ	ENSMUSG00190033790	lncRNA gene	Chr13:57562137-57566874 (+)
NZO/HlLtJ	ENSMUSG00225047398	lncRNA gene	Chr13:61607057-61611786 (+)
PWK/PhJ	ENSLUMG00010023849	lncRNA gene	Chr13:56825545-56830290 (+)
SPRET/EiJ	ENSMSPG00010044450	lncRNA gene	Chr13:57256328-57261043 (+)
WSB/EiJ	ENSIUOG00005026955	lncRNA gene	Chr13:57039654-57044383 (+)

Homology

• Gene Tree
  Gm40975
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40975
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000114502 (Evidence)
• NCBI Gene
  105245530

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114502	Ensembl Gene Model | MGI Sequence Detail	4730	C57BL/6J
transcript	ENSMUST00000224761	Ensembl | MGI Sequence Detail	632	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm40975:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120151	Chr13:61102980-61102982 (+)	-52 bp