Gm40968 Gene Detail

Summary

• Symbol
  Gm40968
• Name
  predicted gene, 40968

• Feature Type
  lncRNA gene
• IDs
  MGI:5623853
  NCBI Gene: 105245522
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:58923278-58945264 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  843 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623853	lncRNA gene	Chr13:58923272-58945264 (-)
129S1/SvImJ	ENSMUSG00200017246	lncRNA gene	Chr13:55805968-55827960 (-)
A/J	ENSMUSG00195045229	lncRNA gene	Chr13:55282298-55304288 (-)
AKR/J	ENSMUSG00220045329	lncRNA gene	Chr13:54820017-54842005 (-)
BALB/cJ	ENSMUSG00180016972	lncRNA gene	Chr13:55537323-55559312 (-)
C3H/HeJ	ENSMUSG00175046043	lncRNA gene	Chr13:55322605-55344596 (-)
C57BL/6NJ	ENSMUSG00215039557	lncRNA gene	Chr13:55330240-55352231 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041538	lncRNA gene	Chr13:55704139-55726129 (-)
CBA/J	ENSMUSG00210041823	lncRNA gene	Chr13:55527531-55549522 (-)
DBA/2J	ENSMUSG00185017238	lncRNA gene	Chr13:56366813-56388810 (-)
FVB/NJ	ENSMUSG00205044666	lncRNA gene	Chr13:55143656-55165652 (-)
JF1/MsJ	ENSUMUG00000035846	lncRNA gene	Chr13:55738585-55760581 (-)
LP/J	ENSMUSG00230034582	lncRNA gene	Chr13:65713636-65735821 (-)
NOD/ShiLtJ	ENSMUSG00190037169	lncRNA gene	Chr13:55383561-55405552 (-)
NZO/HlLtJ	ENSMUSG00225034920	lncRNA gene	Chr13:59426720-59448710 (-)
PWK/PhJ	ENSLUMG00010023366	lncRNA gene	Chr13:54660752-54682748 (-)
SPRET/EiJ	ENSMSPG00010043447	lncRNA gene	Chr13:55027374-55049254 (-)
WSB/EiJ	ENSIUOG00005027041	lncRNA gene	Chr13:54845202-54867183 (-)

Homology

• Gene Tree
  Gm40968
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40968
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000114231 (Evidence)
• NCBI Gene
  105245522

Representative Sequences			Length	Strain/Species
genomic	105245522	NCBI Gene Model | MGI Sequence Detail	21987	C57BL/6J
transcript	XR_873535	RefSeq | MGI Sequence Detail	3753	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69