Gm40922 Gene Detail

Summary

• Symbol
  Gm40922
• Name
  predicted gene, 40922

• Feature Type
  lncRNA gene
• IDs
  MGI:5623807
  NCBI Gene: 105245473
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:38738812-38747865 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  389 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623807	lncRNA gene	Chr13:38738812-38751307 (+)
129S1/SvImJ	ENSMUSG00200013699	lncRNA gene	Chr13:35971007-35979960 (+)
A/J	ENSMUSG00195036175	lncRNA gene	Chr13:35054427-35063382 (+)
AKR/J	ENSMUSG00220034972	lncRNA gene	Chr13:34825277-34834217 (+)
BALB/cJ	ENSMUSG00180008145	lncRNA gene	Chr13:35359983-35368935 (+)
C3H/HeJ	ENSMUSG00175014845	lncRNA gene	Chr13:35312573-35321529 (+)
C57BL/6NJ	ENSMUSG00215012795	lncRNA gene	Chr13:35472727-35481685 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037836	lncRNA gene	Chr13:35422282-35431228 (+)
CBA/J	ENSMUSG00210012020	lncRNA gene	Chr13:35320297-35329249 (+)
DBA/2J	ENSMUSG00185032995	lncRNA gene	Chr13:36137871-36146825 (+)
FVB/NJ	ENSMUSG00205034345	lncRNA gene	Chr13:34993975-35002927 (+)
JF1/MsJ	ENSUMUG00000033522	lncRNA gene	Chr13:35710945-35719051 (+)
LP/J	ENSMUSG00230017312	lncRNA gene	Chr13:45463166-45472118 (+)
NOD/ShiLtJ	ENSMUSG00190012122	lncRNA gene	Chr13:35533929-35542883 (+)
NZO/HlLtJ	ENSMUSG00225035568	lncRNA gene	Chr13:39247487-39256441 (+)
PWK/PhJ	ENSLUMG00010032256	lncRNA gene	Chr13:34524443-34532529 (+)
SPRET/EiJ	ENSMSPG00010011506	lncRNA gene	Chr13:34544885-34553882 (+)
WSB/EiJ	ENSIUOG00005028532	lncRNA gene	Chr13:34668093-34677053 (+)

Homology

• Gene Tree
  Gm40922
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40922
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114866 (Evidence)
• NCBI Gene
  105245473

Representative Sequences			Length	Strain/Species
genomic	105245473	NCBI Gene Model | MGI Sequence Detail	9054	C57BL/6J
transcript	XR_873270	RefSeq | MGI Sequence Detail	686	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69