Gm40918 Gene Detail

Summary

• Symbol
  Gm40918
• Name
  predicted gene, 40918

• Feature Type
  lncRNA gene
• IDs
  MGI:5623803
  NCBI Gene: 105245469
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:37901358-37918718 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  708 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623803	lncRNA gene	Chr13:37865250-37953910 (-)
129S1/SvImJ	ENSMUSG00200013662	lncRNA gene	Chr13:35101300-35127621 (-)
A/J	ENSMUSG00195033865	lncRNA gene	Chr13:34178493-34203976 (-)
AKR/J	ENSMUSG00220035856	lncRNA gene	Chr13:33947984-33973462 (-)
BALB/cJ	ENSMUSG00180008312	lncRNA gene	Chr13:34484097-34509583 (-)
C3H/HeJ	ENSMUSG00175014983	lncRNA gene	Chr13:34436767-34462251 (-)
C57BL/6NJ	ENSMUSG00215015027	lncRNA gene	Chr13:34605857-34631413 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035313	lncRNA gene	Chr13:34536662-34562384 (-)
CBA/J	ENSMUSG00210012001	lncRNA gene	Chr13:34444487-34469972 (-)
DBA/2J	ENSMUSG00185033293	lncRNA gene	Chr13:35271052-35296611 (-)
FVB/NJ	ENSMUSG00205038449	lncRNA gene	Chr13:34139564-34165891 (-)
JF1/MsJ	ENSUMUG00000034015	lncRNA gene	Chr13:34832085-34857872 (-)
LP/J	ENSMUSG00230016480	lncRNA gene	Chr13:44587418-44612901 (-)
NOD/ShiLtJ	ENSMUSG00190013527	lncRNA gene	Chr13:34667116-34692676 (-)
NZO/HlLtJ	ENSMUSG00225034992	lncRNA gene	Chr13:38380672-38406230 (-)
PWK/PhJ	ENSLUMG00010030676	lncRNA gene	Chr13:33660427-33686192 (-)
SPRET/EiJ	ENSMSPG00010011675	lncRNA gene	Chr13:33674329-33700094 (-)
WSB/EiJ	ENSIUOG00005029410	lncRNA gene	Chr13:33805654-33831908 (-)

Homology

• Gene Tree
  Gm40918
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm40918
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  1

• Ensembl
  ENSMUSG00000114732 (Evidence)
• NCBI Gene
  105245469

Representative Sequences			Length	Strain/Species
genomic	105245469	NCBI Gene Model | MGI Sequence Detail	17361	C57BL/6J
transcript	BC048601	GenBank | ENA | DDBJ | MGI Sequence Detail	593	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm40918:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122112	Chr13:37913799-37913806 (-)	4,915 bp