Gm40879 Pseudogene Detail

Summary

• Symbol
  Gm40879
• Name
  predicted gene, 40879

• Feature Type
  pseudogene
• IDs
  MGI:5623764
  NCBI Gene: 105245421
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:18269930-18273713 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623764	pseudogene	Chr12:18269334-18273740 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195022223	pseudogene	Chr12:16313433-16319355 (+)
A/J	ENSMUSG00195022275	pseudogene	Chr12:16755543-16759337 (+)
A/J	ENSMUSG00195021518	pseudogene	Chr12:15327176-15330960 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180010978	pseudogene	Chr12:16507173-16510967 (-)
BALB/cJ	ENSMUSG00180010998	pseudogene	Chr12:16947106-16953028 (-)
BALB/cJ	ENSMUSG00180009791	pseudogene	Chr12:15339077-15342860 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215006362	pseudogene	Chr12:15186119-15189897 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000008043	pseudogene	Chr12:15166270-15170053 (+)
JF1/MsJ	ENSUMUG00000012450	pseudogene	Chr12:18584986-18588785 (-)
JF1/MsJ	ENSUMUG00000012612	pseudogene	Chr12:19043131-19049069 (-)
JF1/MsJ	ENSUMUG00000008371	pseudogene	Chr12:20563608-20569553 (-)
LP/J	ENSMUSG00230021612	pseudogene	Chr12:17079271-17083054 (+)
LP/J	ENSMUSG00230008290	pseudogene	Chr12:21508966-21514906 (-)
LP/J	ENSMUSG00230023334	pseudogene	Chr12:19064517-19068315 (-)
LP/J	ENSMUSG00230023356	pseudogene	Chr12:19515000-19520923 (-)
LP/J	ENSMUSG00230023312	pseudogene	Chr12:18060922-18066844 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225030444	pseudogene	Chr12:20165468-20171390 (+)
NZO/HlLtJ	ENSMUSG00225035497	pseudogene	Chr12:21169083-21172881 (-)
NZO/HlLtJ	ENSMUSG00225035684	pseudogene	Chr12:23711521-23717461 (-)
NZO/HlLtJ	ENSMUSG00225035527	pseudogene	Chr12:21619058-21624981 (-)
NZO/HlLtJ	ENSMUSG00225030155	pseudogene	Chr12:19183819-19187602 (+)
PWK/PhJ	ENSLUMG00010005073	pseudogene	Chr12:14961351-14965134 (+)
PWK/PhJ	ENSLUMG00010005290	pseudogene	Chr12:16528639-16532416 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm40879
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000113736 (Evidence)
• NCBI Gene
  105245421

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113736	Ensembl Gene Model | MGI Sequence Detail	3784	C57BL/6J
transcript	ENSMUST00000220759	Ensembl | MGI Sequence Detail	612	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;