Gm40849 Gene Detail

Summary

• Symbol
  Gm40849
• Name
  predicted gene, 40849

• Feature Type
  lncRNA gene
• IDs
  MGI:5623734
  NCBI Gene: 105245384
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:19094707-19105180 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623734	lncRNA gene	Chr12:19094707-19105180 (+)
129S1/SvImJ	ENSMUSG00200023674	lncRNA gene	Chr12:15306336-15306448 (+)
A/J	ENSMUSG00195018739	lncRNA gene	Chr12:16147373-16157884 (+)
AKR/J	ENSMUSG00220031117	lncRNA gene	Chr12:16346130-16346273 (+)
BALB/cJ	ENSMUSG00180009886	lncRNA gene	Chr12:17108574-17119104 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006439	lncRNA gene	Chr12:15964080-15964193 (-)
CAST/EiJ	ENSTCUG00005006442	lncRNA gene	Chr12:15721965-15731746 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185003860	lncRNA gene	Chr12:17626771-17637237 (-)
FVB/NJ	ENSMUSG00205001874	lncRNA gene	Chr12:16076189-16085003 (-)
JF1/MsJ	ENSUMUG00000011574	lncRNA gene	Chr12:15995227-16005700 (+)
LP/J	ENSMUSG00230023227	lncRNA gene	Chr12:19676682-19686772 (-)
LP/J	ENSMUSG00230023244	lncRNA gene	Chr12:19917275-19927720 (-)
LP/J	ENSMUSG00230021887	lncRNA gene	Chr12:17894921-17905395 (+)
NOD/ShiLtJ	ENSMUSG00190008430	lncRNA gene	Chr12:1018750-1029195 (-)
NZO/HlLtJ	ENSMUSG00225035148	lncRNA gene	Chr12:22119316-22129761 (-)
NZO/HlLtJ	ENSMUSG00225035119	lncRNA gene	Chr12:21780728-21790818 (-)
NZO/HlLtJ	ENSMUSG00225030295	lncRNA gene	Chr12:19999491-20009965 (+)
PWK/PhJ	ENSLUMG00010004382	lncRNA gene	Chr12:17220849-17231337 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm40849
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114188 (Evidence)
• NCBI Gene
  105245384

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114188	Ensembl Gene Model | MGI Sequence Detail	10474	C57BL/6J
transcript	ENSMUST00000222330	Ensembl | MGI Sequence Detail	603	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;