Gm40830 Gene Detail

Summary

• Symbol
  Gm40830
• Name
  predicted gene, 40830

• Feature Type
  lncRNA gene
• IDs
  MGI:5623715
  NCBI Gene: 105245362
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:22081181-22095422 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  471 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623715	lncRNA gene	Chr13:22081181-22095422 (+)
129S1/SvImJ	ENSMUSG00200014548	lncRNA gene	Chr13:19268609-19279189 (+)
A/J	ENSMUSG00195041378	lncRNA gene	Chr13:18416794-18427374 (+)
AKR/J	ENSMUSG00220036081	lncRNA gene	Chr13:18332182-18342757 (+)
BALB/cJ	ENSMUSG00180035828	lncRNA gene	Chr13:18778089-18788664 (+)
C3H/HeJ	ENSMUSG00175035431	lncRNA gene	Chr13:18883236-18893806 (+)
C57BL/6NJ	ENSMUSG00215034371	lncRNA gene	Chr13:18837747-18848329 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015127	lncRNA gene	Chr13:18911474-18922436 (+)
CBA/J	ENSMUSG00210032539	lncRNA gene	Chr13:18744795-18755372 (+)
DBA/2J	ENSMUSG00185014656	lncRNA gene	Chr13:19439144-19449719 (+)
FVB/NJ	ENSMUSG00205052141	lncRNA gene	Chr13:18588657-18599232 (+)
JF1/MsJ	ENSUMUG00000020392	lncRNA gene	Chr13:19140338-19151346 (+)
LP/J	ENSMUSG00230036235	lncRNA gene	Chr13:28832960-28844071 (+)
NOD/ShiLtJ	ENSMUSG00190025479	lncRNA gene	Chr13:18697969-18708549 (+)
NZO/HlLtJ	ENSMUSG00225046523	lncRNA gene	Chr13:22601892-22612474 (+)
PWK/PhJ	ENSLUMG00010030532	lncRNA gene	Chr13:18139654-18150708 (+)
SPRET/EiJ	ENSMSPG00010021805	lncRNA gene	Chr13:17877852-17888847 (+)
WSB/EiJ	ENSIUOG00005038158	lncRNA gene	Chr13:18072898-18083472 (+)

Homology

• Gene Tree
  Gm40830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  4
• Genomic Mutations
  1 involving Gm40830
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000120474 (Evidence)
• NCBI Gene
  105245362

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120474	Ensembl Gene Model | MGI Sequence Detail	14242	C57BL/6J
transcript	ENSMUST00000244010	Ensembl | MGI Sequence Detail	3602	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118802	Chr13:22081356-22081368 (+)	181 bp