Gm40797 Gene Detail

Summary

• Symbol
  Gm40797
• Name
  predicted gene, 40797

• Feature Type
  lncRNA gene
• IDs
  MGI:5623682
  NCBI Gene: 105245322
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:126499804-126513235 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  514 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623682	lncRNA gene	Chr10:126499752-126516438 (+)
129S1/SvImJ	ENSMUSG00200013753	lncRNA gene	Chr10:122849418-122859873 (+)
A/J	ENSMUSG00195017772	lncRNA gene	Chr10:123322781-123333257 (+)
AKR/J	ENSMUSG00220006254	lncRNA gene	Chr10:122920257-122930720 (+)
BALB/cJ	ENSMUSG00180011621	lncRNA gene	Chr10:123313885-123324361 (+)
C3H/HeJ	ENSMUSG00175006299	lncRNA gene	Chr10:123309011-123319476 (+)
C57BL/6NJ	ENSMUSG00215020817	lncRNA gene	Chr10:122917160-122927618 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041921	lncRNA gene	Chr10:122286391-122297330 (+)
CBA/J	ENSMUSG00210009405	lncRNA gene	Chr10:123133164-123143637 (+)
DBA/2J	ENSMUSG00185027904	lncRNA gene	Chr10:123283754-123294193 (+)
FVB/NJ	ENSMUSG00205026584	lncRNA gene	Chr10:122534955-122545415 (+)
JF1/MsJ	ENSUMUG00000047481	lncRNA gene	Chr10:124584475-124595141 (+)
LP/J	ENSMUSG00230034590	lncRNA gene	Chr10:125199159-125209614 (+)
NOD/ShiLtJ	ENSMUSG00190016051	lncRNA gene	Chr10:123355545-123366000 (+)
NZO/HlLtJ	ENSMUSG00225038093	lncRNA gene	Chr10:129397356-129407810 (+)
PWK/PhJ	ENSLUMG00010010398	lncRNA gene	Chr10:123035975-123046447 (+)
SPRET/EiJ	ENSMSPG00010036665	lncRNA gene	Chr10:124988127-124999066 (+)
WSB/EiJ	ENSIUOG00005008881	lncRNA gene	Chr10:122922164-122932610 (+)

Homology

• Gene Tree
  Gm40797
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000112208 (Evidence)
• NCBI Gene
  105245322

Representative Sequences			Length	Strain/Species
genomic	105245322	NCBI Gene Model | MGI Sequence Detail	13432	C57BL/6J
transcript	XR_001779706	RefSeq | MGI Sequence Detail	380	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;