Gm40787 Gene Detail

Summary

• Symbol
  Gm40787
• Name
  predicted gene, 40787

• Feature Type
  lncRNA gene
• IDs
  MGI:5623672
  NCBI Gene: 105245312
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:121324485-121327752 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5623672	lncRNA gene	Chr10:121324485-121329582 (+)
129S1/SvImJ	ENSMUSG00200027532	lncRNA gene	Chr10:117677927-117681106 (+)
A/J	ENSMUSG00195022384	lncRNA gene	Chr10:118080325-118083504 (+)
AKR/J	ENSMUSG00220014887	lncRNA gene	Chr10:117720470-117723653 (+)
BALB/cJ	ENSMUSG00180018179	lncRNA gene	Chr10:118092745-118095924 (+)
C3H/HeJ	ENSMUSG00175025057	lncRNA gene	Chr10:118098083-118101266 (+)
C57BL/6NJ	ENSMUSG00215016480	lncRNA gene	Chr10:117736879-117740057 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032980	lncRNA gene	Chr10:117066185-117069339 (+)
CBA/J	ENSMUSG00210021837	lncRNA gene	Chr10:117934815-117937998 (+)
DBA/2J	ENSMUSG00185009905	lncRNA gene	Chr10:118044074-118047253 (+)
FVB/NJ	ENSMUSG00205027361	lncRNA gene	Chr10:117331872-117335055 (+)
JF1/MsJ	ENSUMUG00000020593	lncRNA gene	Chr10:119335353-119338504 (+)
LP/J	ENSMUSG00230025800	lncRNA gene	Chr10:120005996-120009175 (+)
NOD/ShiLtJ	ENSMUSG00190018239	lncRNA gene	Chr10:118138071-118141254 (+)
NZO/HlLtJ	ENSMUSG00225038142	lncRNA gene	Chr10:124255669-124258852 (+)
PWK/PhJ	ENSLUMG00010013472	lncRNA gene	Chr10:117728089-117731240 (+)
SPRET/EiJ	ENSMSPG00010016780	lncRNA gene	Chr10:119646430-119649513 (+)
WSB/EiJ	ENSIUOG00005014510	lncRNA gene	Chr10:117772826-117776017 (+)

Homology

• Gene Tree
  Gm40787
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000112539 (Evidence)
• NCBI Gene
  105245312

Representative Sequences			Length	Strain/Species
genomic	105245312	NCBI Gene Model | MGI Sequence Detail	3268	C57BL/6J
transcript	XR_872127	RefSeq | MGI Sequence Detail	758	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm40787:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96037	Chr10:121324755-121324766 (+)	276 bp
Tssr96038	Chr10:121324774-121324784 (+)	294 bp
Tssr96039	Chr10:121324883-121324902 (+)	408 bp